Parental gene:

DCAF13, ENSCAFG00000000663

Aliases:DCAF13, WDSOF1
Description:DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535]
Organism:Dog (Canis familiaris)
Coordinates:13:4835340..4860159(+)


>ENSCAFG00000000663
ATGAAGGTGAAGATGCTGAGCCGGAACCCGGACAACTATGTCCGCGAAACCAAGCTGGACTTACAACGAGTTCCAAGAAA
CTATGATCCTACCTTACATCCTTTTGAGGTCCCACGAGAGTATGTAAGAGCTTTAAATGCTACCAAACTGGAACGGGTAT
TTGCAAAACCATTTCTTGCTTCCCTGGATGGTCACCGAGATGGAGTCAATTGCTTGGCAAAGCATCCAAAGAGCCTGGCT
ACTGTCCTTTCTGGGGCATGTGATGGAGAGGTTAGAATTTGGAATTTGACTAAACGAAAATGTATCCGCACAATACAAGC
ACATGAAGGTTTTGTACGAGGAATATGTACTCGATTTTGTGGGACTTCTTTTTTTACTGTTGGTGATGACAAAACTGTGA
AGCAGTGGAAAATGGATGGACCAGGCTATGGAGAAGAGGAGGAACCATTGCATACAATACTAGGAAAGACAGTGTATACA
GGAATTGATCATCACTGGAAAGAAGCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAGCAAAGAACAAG
TCCTATATGTTCAATGACCTGGGGATTCGACAGTATAAGTAGTGTTAAATTTAATCCAATTGAGACATTTCTCTTGGGAA
GTTGTGCTTCTGACAGAAATATAGTACTATATGATATGAGGCAAGCTACTCCCCTGAAAAAGGTCATCTTAGATATGAGA
ACAAATACAATATGTTGGAACCCTATGGAAGCTTTCATTTTTACTGCAGCAAATGAAGATTACAACTTATATACTTTTGA
TATGCGTGCACTGGATACTCCCGTAATGGTACATATGGATCATGTATCTGCGGTGCTTGATGTGGATTATTCTCCCACTG
GGAAAGAGTTTGTGTCAGCTAGTTTTGATAAATCTATTCGTATCTTTCCTGTGGACAAAAGTAGAAGCAGGGAGGTCTAT
CACACAAAGAGAATGCAACATGTTATCTGTGTGAAATGGACTTCTGACAGCAAATATATTATGTGTGGATCTGATGAAAT
GAACATTCGTCTATGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGCTTACATCACGAGAAAAAGCAGCCAAAGATTATA
ACCAGAAGTTGAAGGAGAAATTTCAACATCATCCTCACATAAAACGCATTGCTCGTCACCGGCACCTACCAAAATCCATC
TACAGCCAGATCCAGGAACAGCGCATCATGAAGGAAGCTCGCCGACGAAAGGAGGTGAATCGTCTCAAACACAGCAAGCC
CGGATCTGTGTCGATTGTCCCAGAGAAGAAGAAACACATAGTGGCAGTTGTGAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 13 .15 RPM
SRP017611_brain 9 .13 RPM
SRP017611_kidney 24 .90 RPM
SRP017611_liver 6 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001595 ortholog_one2one 3 retrogenes
retro_amel_1453, retro_amel_1723, retro_amel_399,
Callithrix jacchus ENSCJAG00000016181 ortholog_one2one 2 retrogenes
retro_cjac_3083, retro_cjac_612,
Felis catus ENSFCAG00000027256 ortholog_one2one 1 retrogene
retro_fcat_1840,
Homo sapiens ENSG00000164934 ortholog_one2one 1 retrogene
retro_hsap_1498,
Gorilla gorilla ENSGGOG00000015124 ortholog_one2one 1 retrogene
retro_ggor_1150,
Myotis lucifugus ENSMLUG00000007375 ortholog_one2one 1 retrogene
retro_mluc_2048,
Nomascus leucogenys ENSNLEG00000003791 ortholog_one2one 1 retrogene
retro_nleu_1718,
Otolemur garnettii ENSOGAG00000002277 ortholog_one2one 1 retrogene
retro_ogar_305,
Pongo abelii ENSPPYG00000018809 ortholog_one2one 2 retrogenes
retro_pabe_1249, retro_pabe_3211,
Pan troglodytes ENSPTRG00000020493 ortholog_one2one 1 retrogene
retro_ptro_1017,
Sarcophilus harrisii ENSSHAG00000006588 ortholog_one2one 1 retrogene
retro_shar_507,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_305 96.85 100.00
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2. retro_cfam_1309 74.17 93.03
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3. retro_cfam_1533 74.71 56.85
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Download FASTA sequences of all ENSCAFG00000000663 retrocopies