Parental gene:

LAPTM4B, ENSBTAG00000016959

Aliases:None
Description:lysosomal-associated transmembrane protein 4B [Source:RefSeq peptide;Acc:NP_991371]
Organism:Cow (Bos taurus)
Coordinates:14:68668785..68730708(-)


>ENSBTAG00000016959
ATGAAGATGGTGGCCCCCTGGACGCGGTTCTACTCCAACAGCTGCTGCCTCTGCTGCCATGTCCGCACTGGCACCATCCT
GCTCGGCGTCTGGTACTTGATCCTCAATGCCGTGGTACTGCTGATTCTGTTGAGTGCCCTGGCTGATCCAGATCATTACC
ACTTTTCAAGTTCTGAACTCGGGGGTGACTTTGAGTTCATGGATGATGCCAACATGTGCATTGCCATCGCGATTTCTGTT
CTCATGATCCTTATCTGTGCCATGGCTACGTACGGCGCATACAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGCTA
CCAGATCTTTGATTTTGCCCTCAACACCTTGGTTGCGGTCACCGTACTTGTTTATCCAAACTCCATCCAGGAATACATAC
GACAGCTGCCTCCTGATTTTCCTTACAAAGATGATATCATGTCAGTGAATCCTACCTGTTTGGTCCTCATTATTCTTCTG
TTCATCAGCATTATCTTGGCTTTTAAGGGTTACTTGATTAGCTGTGTTTGGAACTGCTACCGATATATCAATGGCAGGAA
CTCCTCTGATGTCCTGGTTTATGTTACCAGCAACGACACTACGGTGCTGCTACCCCCGTACGATGATGCCACTGTGAACA
GCGCCACCAAGGAGCCGCCGCCCCCGTACGTGTCTGCCTGA

Library Parental gene expression (RPM)
ERP005899_liver 148 .23 RPM
ERP005899_muscle 342 .92 RPM
SRP017611_brain 33 .16 RPM
SRP017611_kidney 114 .87 RPM
SRP017611_liver 212 .03 RPM
SRP030211_testis 118 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020894 within_species_paralog 1 retrogene
retro_btau_575,
Callithrix jacchus ENSCJAG00000031235 possible_ortholog 3 retrogenes
retro_cjac_1368, retro_cjac_1664, retro_cjac_3027,
Myotis lucifugus ENSMLUG00000003618 ortholog_one2one 1 retrogene
retro_mluc_1182,
Macaca mulatta ENSMMUG00000008926 possible_ortholog 1 retrogene
retro_mmul_532,
Mus musculus ENSMUSG00000022257 ortholog_one2one 1 retrogene
retro_mmus_1549,
Nomascus leucogenys ENSNLEG00000003756 possible_ortholog 1 retrogene
retro_nleu_1531,
Oryctolagus cuniculus ENSOCUG00000013689 ortholog_one2one 1 retrogene
retro_ocun_627,
Otolemur garnettii ENSOGAG00000000512 possible_ortholog 3 retrogenes
retro_ogar_1977, retro_ogar_2856, retro_ogar_2902,
Pongo abelii ENSPPYG00000018771 possible_ortholog 2 retrogenes
retro_pabe_2311, retro_pabe_279,
Pan troglodytes ENSPTRG00000020448 possible_ortholog 1 retrogene
retro_ptro_546,
Tursiops truncatus ENSTTRG00000003124 possible_ortholog 1 retrogene
retro_ttru_76,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_786 98.23 100.00
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2. retro_btau_1493 75.76 58.41
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3. retro_btau_1759 71.71 90.27
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Download FASTA sequences of all ENSBTAG00000016959 retrocopies