Parental gene:

RPS27A, ENSBTAG00000015473

Aliases:None
Description:Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62992]
Organism:Cow (Bos taurus)
Coordinates:11:37823445..37825428(+)


>ENSBTAG00000015473
ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCCTCGGATACAATAGAAAATGTAAA
GGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
GTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCGCTAAGAAAAGA
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTTAAATTGGCTGTTCTGAAATACTACAA
GGTGGATGAGAATGGCAAAATCAGTCGCCTTCGCCGGGAGTGTCCCTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCA
GTCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGTTTCAACAAACCAGAAGACAAGTAA

Library Parental gene expression (RPM)
ERP005899_liver 163 .66 RPM
ERP005899_muscle 850 .43 RPM
SRP017611_brain 94 .92 RPM
SRP017611_kidney 263 .88 RPM
SRP017611_liver 151 .02 RPM
SRP030211_testis 155 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004017 possible_ortholog 5 retrogenes
retro_amel_1565, retro_amel_175, retro_amel_598, retro_amel_661, retro_amel_844,
Canis familiaris ENSCAFG00000023471 ortholog_one2one 3 retrogenes
retro_cfam_1048, retro_cfam_640, retro_cfam_81,
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
retro_cjac_200, retro_cjac_229, retro_cjac_344, retro_cjac_74, retro_cjac_88,
Gorilla gorilla ENSGGOG00000007678 possible_ortholog 9 retrogenes
retro_ggor_1290, retro_ggor_1291, retro_ggor_1502, retro_ggor_1749, retro_ggor_179, retro_ggor_203, retro_ggor_2373, retro_ggor_2858, retro_ggor_2885,
Loxodonta africana ENSLAFG00000023133 possible_ortholog 2 retrogenes
retro_lafr_1122, retro_lafr_185,
Myotis lucifugus ENSMLUG00000017064 ortholog_one2one 10 retrogenes
retro_mluc_1201, retro_mluc_1255, retro_mluc_1298, retro_mluc_1646, retro_mluc_1730, retro_mluc_1865, retro_mluc_1867, retro_mluc_2264, retro_mluc_37, retro_mluc_380,
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
retro_mluc_1585,
Macaca mulatta ENSMMUG00000015563 possible_ortholog 8 retrogenes
retro_mmul_1198, retro_mmul_193, retro_mmul_2189, retro_mmul_222, retro_mmul_2470, retro_mmul_282, retro_mmul_606, retro_mmul_73,
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
retro_mdom_1367, retro_mdom_1751, retro_mdom_205,
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
retro_ocun_1087, retro_ocun_1163, retro_ocun_1209, retro_ocun_1259, retro_ocun_1268, retro_ocun_1339, retro_ocun_164, retro_ocun_288, retro_ocun_381, retro_ocun_851,
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
retro_pabe_117,
Pan troglodytes ENSPTRG00000011928 ortholog_one2one 1 retrogene
retro_ptro_32,
Rattus norvegicus ENSRNOG00000004426 possible_ortholog 2 retrogenes
retro_rnor_117, retro_rnor_161,
Ictidomys tridecemlineatus ENSSTOG00000009566 ortholog_one2one 5 retrogenes
retro_itri_1583, retro_itri_1765, retro_itri_26, retro_itri_635, retro_itri_962,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_395 72.50 100.00
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2. retro_btau_440 78.90 69.87
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3. retro_btau_664 85.44 100.00
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4. retro_btau_1115 61.54 71.15
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5. retro_btau_1213 87.82 100.00
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6. retro_btau_1631 94.87 100.00
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Download FASTA sequences of all ENSBTAG00000015473 retrocopies