Parental gene:

PPP1CC, ENSBTAG00000011198

Aliases:None
Description:Serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P61287]
Organism:Cow (Bos taurus)
Coordinates:17:56814812..56833870(-)


>ENSBTAG00000011198
ATGGCGGATATAGATAAACTCAACATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTCCAGCTACAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCCCGAGAGATCTTTCTCAGTCAGCCTATCCTGCTAG
AACTTGAAGCACCACTCAAGATATGTGGTGATATCCATGGGCAATACTATGATTTGCTTCGACTTTTTGAGTACGGTGGT
TTCCCGCCAGAAAGCAATTACCTGTTTCTTGGGGACTATGTGGACAGGGGAAAACAATCACTGGAGACTATCTGCCTCTT
GTTGGCTTACAAAATCAAATATCCCGAGAATTTTTTTCTTCTCAGAGGAAACCACGAATGTGCCAGCATCAATAGAATTT
ATGGATTTTATGATGAATGTAAAAGAAGATATAACATTAAACTATGGAAAACTTTCACAGACTGCTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAAATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCATCAGGTGGTTGAAGATGGATACGAATTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCGCCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCTTTTC
AGATATTAAAGCCTGCAGAGAAAAAGAAGCCTAATGCCACGAGACCCGTCACACCTCCAAGGGGTATGATCACAAAGCAA
GCAAAGAAATAG

Library Parental gene expression (RPM)
ERP005899_liver 50 .54 RPM
ERP005899_muscle 71 .74 RPM
SRP017611_brain 57 .74 RPM
SRP017611_kidney 60 .16 RPM
SRP017611_liver 28 .54 RPM
SRP030211_testis 339 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013861 ortholog_one2one 1 retrogene
retro_amel_1721,
Ciona intestinalis ENSCING00000004542 ortholog_many2many 1 retrogene
retro_cint_3,
Callithrix jacchus ENSCJAG00000009147 ortholog_one2one 7 retrogenes
retro_cjac_1062, retro_cjac_1165, retro_cjac_1408, retro_cjac_2304, retro_cjac_2535, retro_cjac_3288, retro_cjac_822,
Equus caballus ENSECAG00000017228 ortholog_one2one 1 retrogene
retro_ecab_853,
Echinops telfairi ENSETEG00000015721 possible_ortholog 1 retrogene
retro_etel_2065,
Myotis lucifugus ENSMLUG00000010661 ortholog_one2one 2 retrogenes
retro_mluc_15, retro_mluc_2217,
Mus musculus ENSMUSG00000004455 ortholog_one2one 5 retrogenes
retro_mmus_2274, retro_mmus_2968, retro_mmus_3418, retro_mmus_851, retro_mmus_925,
Sorex araneus ENSSARG00000000571 possible_ortholog 1 retrogene
retro_sara_700,
Drosophila melanogaster FBgn0003134 ortholog_many2many 5 retrogenes
retro_dmel_21, retro_dmel_37, retro_dmel_42, retro_dmel_48, retro_dmel_81,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_6 96.04 93.81
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2. retro_btau_960 82.12 92.57
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Download FASTA sequences of all ENSBTAG00000011198 retrocopies