Parental gene:

ODC1, ENSBTAG00000004256

Aliases:None
Description:Ornithine decarboxylase [Source:UniProtKB/Swiss-Prot;Acc:P27117]
Organism:Cow (Bos taurus)
Coordinates:11:87178097..87182503(+)


>ENSBTAG00000004256
ATGAACAGCTTTAGCAATGAAGAGTTTGACTGCCATTTCTTGGATGAAGGCTTTACTGCCAAGGATATTCTGGACCAAAA
AATTAATGAAGTTTCTTATTCTGATGATAAGGATGCCTTCTATGTTGCGGACCTGGGAGACATTCTGAAGAAACATCTGA
GATGGTTGAAAGCTCTTCCTCGGGTCACCCCCTTTTATGCCGTCAAATGCAATGATAGCAGAACCATAGTGAAGACACTC
GCTGCCATTGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAATTGGTGCAGAGTCTCGGGGTGCCCCCAGAGAG
GATTATCTATGCAAATCCATGTAAACAAGTGTCTCAGATTAAGTATGCTGCCAATAACGGAGTCCAGATGATGACTTTTG
ATAGTGAAGTTGAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTACGGATCGCCACTGATGATTCC
AAAGCAGTCTGTCGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGCAGGCTTCTTTTGGAACGGGCGAAAGAGCT
AGATATTGATGTCATTGGTGTCAGCTTCCACGTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATCTCTG
ATGCCCGCTGTGTCTTTGACATGGGCGCTGAGGTTGGTTTCAACATGTATCTGCTTGATATTGGTGGTGGCTTTCCTGGA
TCAGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCAACCCAGCACTGGACAAGTATTTTCCATCAGACTC
TGGAGTGAGAATCATAGCTGAGCCGGGCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATTATTGCCAAAA
AACTTGTATTAAAGGAACAGACAGGCTCTGATGATGAAGAGGAGTCAACTGATCGGACATTTATGTATTATGTGAACGAT
GGAGTATATGGGTCATTCAACTGCATCCTTTATGATCACGCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAACCAGA
TGAGAAGTATTATTCATCCAGCATCTGGGGACCGACCTGTGACGGCCTGGACCGCATTGTTGAGCGCTGTAACCTGCCTG
AGATGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGGTGCTTACACTGTTGCTGCTGCTTCTACCTTCAATGGATTC
CAGAGACCCACCATCTACTATGTGATGTCAGGGCCAACGTGGCAACTGATGCAGCAGATCCGGACCCAGGACTTCCCGCC
TGGAGTGGAGGAGCCGGACGTCGGTCCCCTGCCCGTGTCCTGTGCCTGGGAGAGCGGCATGAAGCGGCACTCGGCAGCCT
GCGCTTCCACGCGTATTAACGTGTAG

Library Parental gene expression (RPM)
ERP005899_liver 12 .11 RPM
ERP005899_muscle 172 .20 RPM
SRP017611_brain 53 .31 RPM
SRP017611_kidney 92 .76 RPM
SRP017611_liver 33 .98 RPM
SRP030211_testis 197 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Choloepus hoffmanni ENSCHOG00000010898 ortholog_one2many 2 retrogenes
retro_chof_1618, retro_chof_2111,
Callithrix jacchus ENSCJAG00000006576 possible_ortholog 2 retrogenes
retro_cjac_3170, retro_cjac_3857,
Dasypus novemcinctus ENSDNOG00000018474 possible_ortholog 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Equus caballus ENSECAG00000022690 ortholog_one2one 2 retrogenes
retro_ecab_1002, retro_ecab_957,
Loxodonta africana ENSLAFG00000005330 ortholog_one2many 2 retrogenes
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 ortholog_one2many 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 possible_ortholog 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_many2many 1 retrogene
retro_mdom_262,
Mustela putorius furo ENSMPUG00000013321 possible_ortholog 1 retrogene
retro_mputfur_1272,
Mus musculus ENSMUSG00000011179 possible_ortholog 12 retrogenes
retro_mmus_2588, retro_mmus_2744, retro_mmus_2745, retro_mmus_2746, retro_mmus_2747, retro_mmus_2834, retro_mmus_2922, retro_mmus_3237, retro_mmus_3677, retro_mmus_503, retro_mmus_912, retro_mmus_984,
Nomascus leucogenys ENSNLEG00000013820 possible_ortholog 1 retrogene
retro_nleu_1119,
Pongo abelii ENSPPYG00000012654 possible_ortholog 1 retrogene
retro_pabe_3090,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,
Tursiops truncatus ENSTTRG00000004611 ortholog_one2one 3 retrogenes
retro_ttru_1940, retro_ttru_731, retro_ttru_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_552 92.99 58.57
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Download FASTA sequences of all ENSBTAG00000004256 retrocopies