Parental gene:

ODC1, ENSTTRG00000004611

Aliases:None
Description:ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_89736:38971..43100(-)


>ENSTTRG00000004611
ATGAACAACTTTAGTAATGAAGAGTTTGACTGCCATTTCCTGGATGAAGGCTTTACTGCCAAGGACATTCTGGACCAAAA
AATTAATGAAGTTTCTTCTTCTGACGATAAGGATGCCTTCTATGTTGCGGACCTGGGAGACATCCTGAAGAAACATCTGA
GATGGTTTAAAGCTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCATAGTGAAGACCCTA
GCTGCCATAGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATCCAGTTGGTGCAGAGTCTCGGGGTGCCTCCAGAAAG
GATTATCTATGCAAATCCTTGTAAACAAGTGTCTCAGATTAAATACGCTGCCAATAATGGAGTCCAGATGATGACTTTTG
ATAGTGAAGTTGAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTGCCACTGATGATTCC
AAAGCAGTCTGTCGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGCAGGCTTCTTTTGGAACGGGCGAAAGAGCT
GGAGATTGATGTCATTGGTGTCAGCTTCCATGTGGGAAGTGGTTGTACTGATCCGGAGACCTTCGTGCAGGCCATCTCTG
ATGCCCGCTGTGTCTTTGACATGGGAGCTGAGGTTGGTTTCAACATGTATCTGCTTGATATCGGTGGTGGCTTTCCCGGA
TCTGAGGATGTAAAGCTTAAATTTGAAGAGATTACCAGTGTAATCAACCCGGCGTTGGACAAGTATTTTCCATCGGACTC
TGGAGTTAGGATCATAGCTGAGCCAGGCAGATACTATGTTGCATCAGCTTTCACACTAGCAGTTAATATCATTGCCAAAA
AACGCGTATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGTCAAGTGAACAGACGTTTATGTATTACGTGAACGAT
GGAGTGTATGGATCTTTCAACTGCATCCTCTACGATCACGCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAACCAGA
TGAGAAGTATTATTCGTCCAGCATCTGGGGACCGACCTGTGATGGCCTGGATCGCATTGTTGAGCGCTGTAACTTGCCCG
AGATGCATGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACACTGTCGCTGCTGCTTCTACTTTCAATGGATTC
CAGAGACCAACCATCTACTATGTGATGTCAGGGCCAACATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGGAGCAGGACATCGGCACCCTGCCTGTGTCCTGTGCTTGGGAGAGTGGAATGAAACGGCACCCAGCATGCG
CTTCAGCTCGTATTAATGTGTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 ortholog_one2one 1 retrogene
retro_btau_552,
Choloepus hoffmanni ENSCHOG00000010898 ortholog_one2one 2 retrogenes
retro_chof_1618, retro_chof_2111,
Dasypus novemcinctus ENSDNOG00000018474 possible_ortholog 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Equus caballus ENSECAG00000022690 ortholog_one2one 2 retrogenes
retro_ecab_1002, retro_ecab_957,
Loxodonta africana ENSLAFG00000005330 ortholog_one2one 2 retrogenes
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 ortholog_one2many 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 possible_ortholog 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_one2many 1 retrogene
retro_mdom_262,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,
Tursiops truncatus ENSTTRG00000000140 within_species_paralog 1 retrogene
retro_ttru_1210,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_731 71.49 53.26
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2. retro_ttru_843 85.89 72.17
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3. retro_ttru_1940 87.01 71.74
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Download FASTA sequences of all ENSTTRG00000004611 retrocopies