Parental gene:

PSMD10, ENSACAG00000012006

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555]
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343202.1:3963195..3970938(-)


>ENSACAG00000012006
ATGGAGGACGGGGGTGGCTCGGTCTCCGACGTGGAGGTGTGCAACCTGGCCTACTTGGGCCGCCTGGAGGAGTTGAAGGA
GCGGCTGGGAAACAACCGGAGCTTGGCCACCAAAGTCGACCAGGATAACAGGACGGCCCTGCACTGGGCCTGCTCCGCTG
GGCATCCAGACATTGTGGACCTCTTGCTGAGCCTGGGAGCTCCTGTGAATGACAAGGACGATGCCGGATGGAGCCCTCTG
CACATCGCTGCTTCAGCCGGCCGGGAGGAGATTGTGAAAGACCTTTTGAAAGAAGGTGCTCAGGTCAATGCTGTCAACCA
AAATGGCTGCACTCCACTGCATTACGCCGCTTCCAAAAACAAGCAGGAGATTGCGCTCATGCTGCTAGAGAACAAGGCCA
ATCCGGATGCAAAGGACCACATGGGCTCCACTCCATTGCACAGAGCGGCCTCCAAAGGGAACCTGAAGATGATACAGATC
CTTTTGAAGCACAAAGCATCTGCCAATCTGCAGGATTCGGAAGGAAACACGGCCCTCCATTTAGCCTGCGATGAAGAGAG
AGTGGATGAAGCCAAGCTTTTGGTGTCCCAAGGTGCAAGTATCTACATTGAGAACAAAGAAGAAAAGACCCCCCTTCAAG
TTGCCAAAGGCGGCCTGGGATCTATCCTGAGGAGGCTTGCTGAAGAAGATAAACCCTTGGCAACCGTCTTTCCATTTGGA
AGCTATTAA

Library Parental gene expression (RPM)
SRP009831_adrenal 7 .52 RPM
SRP009831_brain 4 .02 RPM
SRP009831_dewlap 8 .31 RPM
SRP009831_embryo 11 .44 RPM
SRP009831_heart 7 .32 RPM
SRP009831_liver 2 .74 RPM
SRP009831_lung 4 .43 RPM
SRP009831_ovary 9 .42 RPM
SRP009831_skeletal_muscle 1 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007717 ortholog_one2many 1 retrogene
retro_cjac_2515,
Cavia porcellus ENSCPOG00000015068 ortholog_one2many 1 retrogene
retro_cpor_358,
Dasypus novemcinctus ENSDNOG00000001902 ortholog_one2one 5 retrogenes
retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Homo sapiens ENSG00000101843 ortholog_one2one 3 retrogenes
retro_hsap_1214, retro_hsap_2435, retro_hsap_2737,
Gorilla gorilla ENSGGOG00000002969 ortholog_one2one 3 retrogenes
retro_ggor_1515, retro_ggor_1906, retro_ggor_945,
Microcebus murinus ENSMICG00000002059 ortholog_one2one 1 retrogene
retro_mmur_550,
Myotis lucifugus ENSMLUG00000014534 ortholog_one2one 1 retrogene
retro_mluc_2008,
Macaca mulatta ENSMMUG00000016981 ortholog_one2many 1 retrogene
retro_mmul_1290,
Nomascus leucogenys ENSNLEG00000014001 ortholog_one2one 2 retrogenes
retro_nleu_243, retro_nleu_690,
Oryctolagus cuniculus ENSOCUG00000010837 ortholog_one2many 1 retrogene
retro_ocun_793,
Otolemur garnettii ENSOGAG00000006419 ortholog_one2many 1 retrogene
retro_ogar_213,
Procavia capensis ENSPCAG00000005221 ortholog_one2one 1 retrogene
retro_pcap_461,
Pongo abelii ENSPPYG00000020618 ortholog_one2one 3 retrogenes
retro_pabe_1010, retro_pabe_1793, retro_pabe_2275,
Pan troglodytes ENSPTRG00000022169 ortholog_one2one 3 retrogenes
retro_ptro_1407, retro_ptro_1851, retro_ptro_831,
Ictidomys tridecemlineatus ENSSTOG00000003783 ortholog_one2one 3 retrogenes
retro_itri_1684, retro_itri_312, retro_itri_676,
Tarsius syrichta ENSTSYG00000009920 ortholog_one2one 13 retrogenes
retro_tsyr_1160, retro_tsyr_1674, retro_tsyr_1684, retro_tsyr_1741, retro_tsyr_1830, retro_tsyr_1968, retro_tsyr_1989, retro_tsyr_2010, retro_tsyr_2138, retro_tsyr_2151, retro_tsyr_2167, retro_tsyr_674, retro_tsyr_803,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_134 83.53 70.25
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Download FASTA sequences of all ENSACAG00000012006 retrocopies