Parental gene:

PSMD10, ENSSTOG00000003783

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393309.1:6691791..6698307(+)


>ENSSTOG00000003783
ATGGAGGGGTGTGTGTCTAACCTGATGGTCTGCAACCTGGCCTACAGCGGGAAGCTGGAGGAGTTGAAGGAGAGCATCCT
GGCCGATAAATCACTGGCTACTAGAACTGACCAGGACAGCAGAACTGCATTGCACTGGGCATGTTCAGCCGGACATACTG
AAATTGTTGAGTTCTTGCTGCAACTTGGAGTGCCAGTGAATGATAAAGATGATGCAGGCTGGTCTCCTCTTCATATTGCT
GCTTCTGCTGGCCGGGATGAAATTGTAAAGGCGCTCCTGGGAAAAGGTGCACAAGTGAATGCTGTCAATCAAAATGGCTG
TACTCCCCTACATTATGCAGCTTCTAAAAACAGGCATGAGATTGCTGTCATGTTACTAGAAGGTGGAGCTAATCCAGATG
CTAAGGATCATTATGAGGCTACAGCAATGCACCGGGCAGCAGCCAAGGGTAACTTGAAGATGATTCATATTCTTCTGTAC
TACAAAGCATCCACAAACATCCAAGACACTGAGGGTAACACTCCTCTACACTTAGCCTGTGATGAGGAGAGAGTAGAAGA
AGCAAAGCTGCTGGTGTCCCAAGGAGCAAGTATATACATTGAGAATAAGGAAGAAAAGACACCCCTGCAAGTGGCCAAAG
GTGGCCTGGGTTTAATACTCAAGAGAATGGTTGAAGGTTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012006 ortholog_one2one 1 retrogene
retro_acar_134,
Callithrix jacchus ENSCJAG00000007717 ortholog_one2many 1 retrogene
retro_cjac_2515,
Cavia porcellus ENSCPOG00000015068 possible_ortholog 1 retrogene
retro_cpor_358,
Dasypus novemcinctus ENSDNOG00000001902 ortholog_one2one 5 retrogenes
retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Homo sapiens ENSG00000101843 ortholog_one2one 3 retrogenes
retro_hsap_1214, retro_hsap_2435, retro_hsap_2737,
Gorilla gorilla ENSGGOG00000002969 ortholog_one2one 3 retrogenes
retro_ggor_1515, retro_ggor_1906, retro_ggor_945,
Macaca mulatta ENSMMUG00000016981 possible_ortholog 1 retrogene
retro_mmul_1290,
Nomascus leucogenys ENSNLEG00000014001 ortholog_one2one 2 retrogenes
retro_nleu_243, retro_nleu_690,
Oryctolagus cuniculus ENSOCUG00000010837 ortholog_one2many 1 retrogene
retro_ocun_793,
Otolemur garnettii ENSOGAG00000006419 ortholog_one2many 1 retrogene
retro_ogar_213,
Procavia capensis ENSPCAG00000005221 ortholog_one2one 1 retrogene
retro_pcap_461,
Pongo abelii ENSPPYG00000020618 ortholog_one2one 3 retrogenes
retro_pabe_1010, retro_pabe_1793, retro_pabe_2275,
Pan troglodytes ENSPTRG00000022169 ortholog_one2one 3 retrogenes
retro_ptro_1407, retro_ptro_1851, retro_ptro_831,
Tarsius syrichta ENSTSYG00000009920 ortholog_one2one 13 retrogenes
retro_tsyr_1160, retro_tsyr_1674, retro_tsyr_1684, retro_tsyr_1741, retro_tsyr_1830, retro_tsyr_1968, retro_tsyr_1989, retro_tsyr_2010, retro_tsyr_2138, retro_tsyr_2151, retro_tsyr_2167, retro_tsyr_674, retro_tsyr_803,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_312 82.67 98.67
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2. retro_itri_676 82.14 72.12
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3. retro_itri_1684 87.20 54.87
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Download FASTA sequences of all ENSSTOG00000003783 retrocopies