RetrogeneDB ID: retro_mluc_2008

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429985:646377..646725(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PSMD10
• Ensembl ID: ENSMLUG00000014534
• Aliases: None
• Description: None

Sequence

>retro_mluc_2008
GGGTCTGTGTCTAAGCGGGTGGTCTGCGGTCTGGCCGGCAGCGGGAAGCTGGAGGAGTTGAAGTAGGAGGTCCTGGCGCA
GACATCCCGGCTACTAGACCTGGCCCGGACAGCAGAGCTGCATTGCATGGGCGTGCTCAGCGGACACACGGAAATGGTTG
CATTCTTGCGGCACCTTGGGGTGCCAGTGCGTGATGAGCGCGATGCCGGTCGGTCTCCGCTTCATATTGCTGCTTCCACT
GGCTGGGATAATGAGACTGTAAAAGCCCTTCTGGGAAGAGGTGCTCAAGTGAATGCTGCCCATCAAAATGGCTGGACTCC
CCCACACTGTGCAGCTGTTGCCCGAAGG

Alignment

ORF - retro_mluc_2008 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.5 %
• Parental protein coverage: 51.33 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GFVSNLTVCNLAYSGKLQELKEEILADKSL-ATRTDQDSRTALH-WACSA-GHTEIVEFLLQLGVPVNDK
          G.VS...VC.LA.SGKL.ELK.E.LA..S..ATR...DSR.ALH.WACSA.GHTE.V.FL..LGVPV.D.
Retrocopy GSVSKRVVCGLAGSGKLEELK*EVLAQTSR<ATRPGPDSRAALH<WACSA<GHTEMVAFLRHLGVPVRDE

Parental  DDAGWSPLHIAASAGRD-EIVKALLGRGAQVNAVNQNGCTPLHYAASKNR
          .DAG.SPLHIAAS.G.D.E.VKALLGRGAQVNA..QNG.TP.H.AA...R
Retrocopy RDAGRSPLHIAASTGWDNETVKALLGRGAQVNAAHQNGWTPPHCAAVARR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2008 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000012006	1 retrocopy	retro_acar_134,
Callithrix jacchus	ENSCJAG00000007717	1 retrocopy	retro_cjac_2515,
Cavia porcellus	ENSCPOG00000015068	1 retrocopy	retro_cpor_358,
Dasypus novemcinctus	ENSDNOG00000001902	5 retrocopies	retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Microcebus murinus	ENSMICG00000002059	1 retrocopy	retro_mmur_550,
Myotis lucifugus	ENSMLUG00000014534	1 retrocopy	retro_mluc_2008 ,
Macaca mulatta	ENSMMUG00000016981	1 retrocopy	retro_mmul_1290,
Oryctolagus cuniculus	ENSOCUG00000010837	1 retrocopy	retro_ocun_793,
Otolemur garnettii	ENSOGAG00000006419	1 retrocopy	retro_ogar_213,
Procavia capensis	ENSPCAG00000005221	1 retrocopy	retro_pcap_461,