Parental gene:

SNRPD1, ENSACAG00000006364

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343324.1:215252..223013(+)


>ENSACAG00000006364
ATGAAGCTTGTGAGATTTCTTATGAAACTAAGTCATGAAACTGTAACTATTGAACTGAAGAATGGGACCCAGGTTCATGG
AACCATCACAGGAGTGGATGTTAGTATGAATACGCATCTCAAAGCTGTGAAAATGACTCTGAAAAACAGAGAACCCGTCC
AGTTGGAAACTTTGAGTATTAGAGGCAATAATATAAGATATTTCATTCTGCCAGACAGCTTGCCACTGGACACCCTCTTG
GTGGATGTTGAACCAAAAGTCAAATCCAAGAAAAGGGAAGCAGTTGCTGGAAGAGGGCGTGGGAGAGGGCGTGGGAGAGG
CAGAGGACGTGGTCGAGGAAGAGGAGGTCCAAGACGATAA

Library Parental gene expression (RPM)
SRP009831_adrenal 50 .91 RPM
SRP009831_brain 43 .32 RPM
SRP009831_dewlap 69 .86 RPM
SRP009831_embryo 171 .19 RPM
SRP009831_heart 21 .01 RPM
SRP009831_liver 27 .45 RPM
SRP009831_lung 13 .80 RPM
SRP009831_ovary 69 .49 RPM
SRP009831_skeletal_muscle 7 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008292 ortholog_one2many 3 retrogenes
retro_btau_144, retro_btau_706, retro_btau_84,
Canis familiaris ENSCAFG00000018247 ortholog_one2one 1 retrogene
retro_cfam_373,
Dasypus novemcinctus ENSDNOG00000018773 ortholog_one2one 4 retrogenes
retro_dnov_1254, retro_dnov_1716, retro_dnov_1832, retro_dnov_2403,
Felis catus ENSFCAG00000012352 ortholog_one2one 1 retrogene
retro_fcat_1885,
Homo sapiens ENSG00000167088 ortholog_one2one 2 retrogenes
retro_hsap_1147, retro_hsap_372,
Macaca mulatta ENSMMUG00000003992 ortholog_one2one 2 retrogenes
retro_mmul_887, retro_mmul_891,
Mustela putorius furo ENSMPUG00000005567 possible_ortholog 1 retrogene
retro_mputfur_185,
Mus musculus ENSMUSG00000002477 ortholog_one2one 1 retrogene
retro_mmus_1996,
Oryctolagus cuniculus ENSOCUG00000023761 possible_ortholog 1 retrogene
retro_ocun_224,
Pongo abelii ENSPPYG00000025874 ortholog_one2one 3 retrogenes
retro_pabe_254, retro_pabe_948, retro_pabe_952,
Pan troglodytes ENSPTRG00000009909 ortholog_one2one 2 retrogenes
retro_ptro_291, retro_ptro_781,
Pteropus vampyrus ENSPVAG00000005511 ortholog_one2one 1 retrogene
retro_pvam_450,
Rattus norvegicus ENSRNOG00000013714 ortholog_one2one 2 retrogenes
retro_rnor_2671, retro_rnor_2729,
Sarcophilus harrisii ENSSHAG00000011791 ortholog_one2one 1 retrogene
retro_shar_147,
Tursiops truncatus ENSTTRG00000002654 ortholog_one2one 2 retrogenes
retro_ttru_1566, retro_ttru_1890,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_129 85.00 84.03
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Download FASTA sequences of all ENSACAG00000006364 retrocopies