Parental gene:

SNRPD1, ENSPTRG00000009909

Aliases:SNRPD1, SNRPD2
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:18:17269544..17289300(+)


>ENSPTRG00000009909
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGG
AACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTAC
AGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCGGACAGTTTACCTCTGGATACACTACTT
GTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTGTTGCAGGAAGAGGCAGAGGCAGAGGAAGAGGAAGAGG
ACGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .96 RPM
SRP007412_cerebellum 8 .75 RPM
SRP007412_heart 5 .13 RPM
SRP007412_kidney 8 .08 RPM
SRP007412_liver 8 .09 RPM
SRP007412_testis 10 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006364 ortholog_one2one 1 retrogene
retro_acar_129,
Bos taurus ENSBTAG00000008292 possible_ortholog 3 retrogenes
retro_btau_144, retro_btau_706, retro_btau_84,
Canis familiaris ENSCAFG00000018247 ortholog_one2one 1 retrogene
retro_cfam_373,
Dasypus novemcinctus ENSDNOG00000018773 ortholog_one2one 4 retrogenes
retro_dnov_1254, retro_dnov_1716, retro_dnov_1832, retro_dnov_2403,
Felis catus ENSFCAG00000012352 ortholog_one2one 1 retrogene
retro_fcat_1885,
Macaca mulatta ENSMMUG00000003992 ortholog_one2one 2 retrogenes
retro_mmul_887, retro_mmul_891,
Mustela putorius furo ENSMPUG00000005567 possible_ortholog 1 retrogene
retro_mputfur_185,
Oryctolagus cuniculus ENSOCUG00000023761 possible_ortholog 1 retrogene
retro_ocun_224,
Pongo abelii ENSPPYG00000025874 ortholog_one2one 3 retrogenes
retro_pabe_254, retro_pabe_948, retro_pabe_952,
Pteropus vampyrus ENSPVAG00000005511 ortholog_one2one 1 retrogene
retro_pvam_450,
Rattus norvegicus ENSRNOG00000013714 ortholog_one2one 2 retrogenes
retro_rnor_2671, retro_rnor_2729,
Tursiops truncatus ENSTTRG00000002654 ortholog_one2one 2 retrogenes
retro_ttru_1566, retro_ttru_1890,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_291 84.03 100.00
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2. retro_ptro_781 71.05 90.76
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Download FASTA sequences of all ENSPTRG00000009909 retrocopies