RetrogeneDB ID: retro_ttru_778

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3393:209554..210160(-)
• Located in intron of: ENSTTRG00000005771

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABHD10
• Ensembl ID: ENSTTRG00000016358
• Aliases: None
• Description: abhydrolase domain containing 10 [Source:HGNC Symbol;Acc:25656]

Sequence

>retro_ttru_778
CACGCCTGTATAAGCTTTGATTACTCAGGAGTTGGAAATTCAGATGGTAACTTAGAAGAATGCACAGTGGGAAAATGGAG
AAAAGATGTTCTTTCTATAATTGATGACTTAGCTGAAGGACCACAGATACTAGCTGGATCTAGCCTCGGTGGATGGCTTA
TACTTCATGCTGCAATCGCACGGCCACAAAAGGTTGTTGCTCTTATTGGCATAGCGACAGCTGTGGATGGCCTAGTGACA
CAGTTTAATCAGCTTCCTGTTGAGGCAAAAAAGGAAATAGAGATGAAAGATGTGTGGTCCATGCCATCAAAATACAGTGA
AGGAGGAGTTTATCGCATTCAGTACAGTGTCATTAAAGAAGCAGAGCACCACTGCTTGTTACATAGTCCTATTCCTGTGA
ACTGCCCTATAAGATTGCTCCACGGCATGAAGGATGACATTGTATCATGGCATACGTCCATGCAGGTTGCTGACCGAGTA
GTCAGCACAGATGTAGATGTCTTCCTCCGAAAGAATAGTGATCACCGAATGAAGGAAAAAGCGGACATTCAACTTCTGGT
TTACACTATTGATGACTTAATTGATAAGCTTTCAACTGTAGTTAAC

Alignment

ORF - retro_ttru_778 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.54 %
• Parental protein coverage: 66.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HAYIRFDYSGVGNSDGNLEECTVGKWRKDVLSIIDDLAEGPQILVGSSLGGWLMLHAAIARPQKVVALIG
          HA.I.FDYSGVGNSDGNLEECTVGKWRKDVLSIIDDLAEGPQIL.GSSLGGWL.LHAAIARPQKVVALIG
Retrocopy HACISFDYSGVGNSDGNLEECTVGKWRKDVLSIIDDLAEGPQILAGSSLGGWLILHAAIARPQKVVALIG

Parental  VATAVDSLVTQFNQLPVEAKKEIEMKDVWSMPSKYSEGGVYRIQYSVIKEAEHYCLLHSPIPVNCPIRLL
          .ATAVD.LVTQFNQLPVEAKKEIEMKDVWSMPSKYSEGGVYRIQYSVIKEAEH.CLLHSPIPVNCPIRLL
Retrocopy IATAVDGLVTQFNQLPVEAKKEIEMKDVWSMPSKYSEGGVYRIQYSVIKEAEHHCLLHSPIPVNCPIRLL

Parental  HGMKDDIVPWHTSMQVADRVVSTDVDVILRKNSDHRMKEKADIQLLVYTIDDLIDKLSTVVN
          HGMKDDIV.WHTSMQVADRVVSTDVDV.LRKNSDHRMKEKADIQLLVYTIDDLIDKLSTVVN
Retrocopy HGMKDDIVSWHTSMQVADRVVSTDVDVFLRKNSDHRMKEKADIQLLVYTIDDLIDKLSTVVN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_778 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_778 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020230	1 retrocopy	retro_cjac_2973,
Cavia porcellus	ENSCPOG00000005650	1 retrocopy	retro_cpor_1498,
Dipodomys ordii	ENSDORG00000014818	1 retrocopy	retro_dord_28,
Felis catus	ENSFCAG00000029739	1 retrocopy	retro_fcat_176,
Ochotona princeps	ENSOPRG00000009517	1 retrocopy	retro_opri_1051,
Tursiops truncatus	ENSTTRG00000016358	1 retrocopy	retro_ttru_778 ,