RetrogeneDB ID: retro_fcat_176

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: A1:125890157..125891074(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000022914
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ABHD10
• Ensembl ID: ENSFCAG00000029739
• Aliases: None
• Description: abhydrolase domain containing 10 [Source:HGNC Symbol;Acc:25656]

Sequence

>retro_fcat_176
ATGGCAGGGGCAGGCATGGCTGCCCTGGGCTCTTGGGTACCTCATCAGAGGTGGGGCAGAGAGGCTGTCTTCTTAGGCTT
CCACCATGGCCTCAGCACGTTACTTGCAAGGAAGTCGGAGTGGATGCCACGGTGGGTCCCAGCTTGCAGACCAAAGTCAT
CAGTCTCTTTTCTTAGTCGACCAGACCTTTCAAACCTGGCTTATAAGAAGCTAAAAGGCAAAAGCCCGGGAATTATCTTC
ATCCCTGGCTATATTTCTAACATGAATGGTACAAAACCTTTGGCGATTGGAGAGTTTTGCAAATCTCTAGGTCATGCCTA
TATAAGGTTTGATTACTCAGGAGTTGGAAATTCGGATGGTAACTTACAAGAATGCACAGTGGGAAAATGGAGAAAAGATG
TTCTTTCTATAATTGATGACTTAGCTGAAGGACCACAGATACTTGTTGGATCTAGCCTTGGTCGATGGCTTATGCTTCAT
GCTGCAATCGCAAGCCACAAAAGGTCATTGCTCTTGTTGGTATAGCTACAGCTGTAGATGACCTAGTGACACAGTTTAAT
CAGCTCCCTGTTGAGGTGAAAAAGGAAATAGAGATGAAAGGTGTGTGGACCATGCCATCAAAATACAGTGAAAAAGGAGT
TTTTGACATTCAGTACAGTTTCATTAAAGAAGCTGAACACCACTGCTTGTTACATAGCCCTATTCCTGTGAACTGCCCTA
TACGATTGCTCCACGGCATGAAAGATGACATCATACCTTGGCATACATCCATACAGGTTGCCGACCGAGTAGTCAGCAAA
GATGTAGATGTCATCCTCCGAAAACACAGTGATCACAGAATGAAGGAATAATCGGACATTCAACTTCTTGTTTACACTAT
TGATGACTTAATTGATAAACTTTCAACTGTAGTTAAC

Alignment

ORF - retro_fcat_176 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.86 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAGAGMATLGSWVPRRRWGREAVFLGFYRGLSALLAGKSERTPRWVPACRPKSSVSFLSRPDLPNLAYKK
          MAGAGMA.LGSWVP..RWGREAVFLGF..GLS.LLA.KSE..PRWVPACRPKSSVSFLSRPDL.NLAYKK
Retrocopy MAGAGMAALGSWVPHQRWGREAVFLGFHHGLSTLLARKSEWMPRWVPACRPKSSVSFLSRPDLSNLAYKK

Parental  LKGKSPGIIFIPGYISNMNGTKALAIEEFCKSLGHAYIRFDYSGVGNSDGNLQECTVGKWRKDVLSIIDD
          LKGKSPGIIFIPGYISNMNGTK.LAI.EFCKSLGHAYIRFDYSGVGNSDGNLQECTVGKWRKDVLSIIDD
Retrocopy LKGKSPGIIFIPGYISNMNGTKPLAIGEFCKSLGHAYIRFDYSGVGNSDGNLQECTVGKWRKDVLSIIDD

Parental  LAEGPQILVGSSLGGWLMLHAAIA-RPQKVVALIGIATAVDGLVIQFNQLPVEVKKEIEVKGVWSMPSKY
          LAEGPQILVGSSLG.WLMLHAAIA..PQKV.AL.GIATAVD.LV.QFNQLPVEVKKEIE.KGVW.MPSKY
Retrocopy LAEGPQILVGSSLGRWLMLHAAIA<KPQKVIALVGIATAVDDLVTQFNQLPVEVKKEIEMKGVWTMPSKY

Parental  SEKGVYDIQYSFIKEAEHHCLLHSPIPVNCPIRLLHGMKDDIVPWHTSIQVADRVVSKDVDVILRKNSDH
          SEKGV.DIQYSFIKEAEHHCLLHSPIPVNCPIRLLHGMKDDI.PWHTSIQVADRVVSKDVDVILRK.SDH
Retrocopy SEKGVFDIQYSFIKEAEHHCLLHSPIPVNCPIRLLHGMKDDIIPWHTSIQVADRVVSKDVDVILRKHSDH

Parental  RMKEKSDIQLLVYTIDDLIDKLSTVVN
          RMKE.SDIQLLVYTIDDLIDKLSTVVN
Retrocopy RMKE*SDIQLLVYTIDDLIDKLSTVVN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	12.97 RPM
SRP017611_kidney	0.21 RPM	5.36 RPM
SRP017611_liver	0.20 RPM	11.52 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_176 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_176 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020230	1 retrocopy	retro_cjac_2973,
Cavia porcellus	ENSCPOG00000005650	1 retrocopy	retro_cpor_1498,
Dipodomys ordii	ENSDORG00000014818	1 retrocopy	retro_dord_28,
Felis catus	ENSFCAG00000029739	1 retrocopy	retro_fcat_176 ,
Ochotona princeps	ENSOPRG00000009517	1 retrocopy	retro_opri_1051,
Tursiops truncatus	ENSTTRG00000016358	1 retrocopy	retro_ttru_778,