RetrogeneDB ID: retro_ttru_542

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2636:36433..36868(+)
• Located in intron of: ENSTTRG00000007769

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AURKB
• Ensembl ID: ENSTTRG00000010318
• Aliases: None
• Description: aurora kinase B [Source:HGNC Symbol;Acc:11390]

Sequence

>retro_ttru_542
CCTCAGAGAGTCCTCCGGAAGGAGCCTGTAACCCCATCTGCACTTGTCCTCATGAGCCGCTCCAACGCCCAGCCCACAGG
TGCCCCTGTCCAGAAGGTGGTGGAGAACAGCAGTGGGACCCCACGCTTCTCAATGCGTTCCTTCCCAATTGACGACTTTG
AGACTGGGAGTCCTCTGGGCAAAGGCAAGTTTGGAAATGTGTACTGGGCTTGGGAGAAGAAAAGCCATTTCATCGTGGCG
CTCCAAGTCTTCTTCAAGTCTCAGGTACAGAAGGAGGGTGTGGAGCACCAGCTACGCAGGGAGACTGAAATCCAGGCCCA
ACTGCAGCACCCCAACATCTTGCGTCTCTACAGCTACTTCTATGACTGGCAAGGATCTCCTTGATTCTGGAGTATGCCCT
CCCGGTGGGAGCTCTACAAGAACATGCAGAAGAGC

Alignment

ORF - retro_ttru_542 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.31 %
• Parental protein coverage: 58. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PQRVLRKEPVTPSALVLMSRSNAQPTAAPLQKVVENNSRTPNFSMRSFTIDDFEIGRPLGKGKFGNVYLA
          PQRVLRKEPVTPSALVLMSRSNAQPT.AP.QKVVEN.S.TP.FSMRSF.IDDFE.G.PLGKGKFGNVY.A
Retrocopy PQRVLRKEPVTPSALVLMSRSNAQPTGAPVQKVVENSSGTPRFSMRSFPIDDFETGSPLGKGKFGNVYWA

Parental  REKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLQHPNILRLYNYFYDRR-RIYLILEYA-PRGEL
          .EKKSHFIVAL.V.FKSQ..KEGVEHQLRRE.EIQA.LQHPNILRLY.YFYD...RI.LILEYA..R.EL
Retrocopy WEKKSHFIVALQVFFKSQVQKEGVEHQLRRETEIQAQLQHPNILRLYSYFYDWQ<RISLILEYA>SRWEL

Parental  YKELQKS
          YK..QKS
Retrocopy YKNMQKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_542 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_542 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013775	1 retrocopy	retro_mmur_567,
Myotis lucifugus	ENSMLUG00000003633	2 retrocopies	retro_mluc_764, retro_mluc_798,
Macaca mulatta	ENSMMUG00000002997	1 retrocopy	retro_mmul_2367,
Pteropus vampyrus	ENSPVAG00000016378	1 retrocopy	retro_pvam_1045,
Tursiops truncatus	ENSTTRG00000010318	1 retrocopy	retro_ttru_542 ,