RetrogeneDB ID: retro_mluc_764

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:7475658..7476469(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030210
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AURKB
• Ensembl ID: ENSMLUG00000003633
• Aliases: None
• Description: None

Sequence

>retro_mluc_764
CGCAGCCTCACCATCGACGACTTTGACACCGGGCGCCCCCTGGGCAAGGGGAAGTTTGGGAACGTGTACCTGGCCCGGCT
CAGGGACAGCCATTTCATCGTGGCCCTCAAGGTCCTGTTCAAGTCGCAGCTGGAGAAGGAGGGGATGGAGCACCAGCTGC
GCAGGGAGATCGAGATCCAGTCGCATCTGCAACATCCCAATATCCTACGCCTATACAACTACTTCCATAATGAGCGTCGT
GTGTACCTTATCCTGGAATACACGCCACGGGGTGAGCTCTACAAGGAGCTGCAAAAGAGCCACACAATCGATGAGCAGCG
TACAGCCACGATCATGGAGGAGCTGGCGCACGCTATGGCCTACTGCCACGAGAACAAGGTGATCCACAGGGACATTAAGC
CGGAGAACCTGCTGCTGGGGCTCCTGGGGAAGGTGAAGATTGCGGACTTTGGCTGGTCCGTGCACACCCCCTCGCTGAGG
AGGAAGACCATGTGCGGGACTCTGGATTACTTGCCCCCGGAAATGGTCGAGCAGAGGACGTACAGCGAGATGGTGGACCT
GTGGTGCATCGGGGTGCTCTGCTAAGAGGCTGCTGGTGGGAAATCCCCCCTTCAAGAGCTCCTCCTACTCCGAGACCTAC
AGGCGCATCCTCAAGGTTGATGTAAAGTTTCCTCCATCGATACCTTTGGGGGCCCAGGACTTGATCAGCAAGCTTCTCAG
ATACCAGCCCTCAGAGCGGCTGCCGCTGGCCCAGGTCCTGCAGCACCCATGGGTGCAGGCCCATTCTCGGAGGGTGGGGC
CTCCACCCGCT

Alignment

ORF - retro_mluc_764 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.18 %
• Parental protein coverage: 79.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RSFTIDDFEIGRPLGKGKFGNVYLAREKKSRFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLQHPNILR
          RS.TIDDF..GRPLGKGKFGNVYLAR...S.FIVALKVLFKSQ.EKEG.EHQLRREIEIQ.HLQHPNILR
Retrocopy RSLTIDDFDTGRPLGKGKFGNVYLARLRDSHFIVALKVLFKSQLEKEGMEHQLRREIEIQSHLQHPNILR

Parental  LYNYFYDRRRIYLILEYAPRGELYKELQKSRTFDQQRTATIMEELADALMYCHKKKVIHRDIKPENLLLG
          LYNYF...RR.YLILEY.PRGELYKELQKS.T.D.QRTATIMEELA.A..YCH..KVIHRDIKPENLLLG
Retrocopy LYNYFHNERRVYLILEYTPRGELYKELQKSHTIDEQRTATIMEELAHAMAYCHENKVIHRDIKPENLLLG

Parental  LQGELKIADFGWSVHAPSLRRKTMCGTLDYLPPEMIEGRTHNEKVDLWCIGVLCYE-LLVGNPPFESASH
          L.G..KIADFGWSVH.PSLRRKTMCGTLDYLPPEM.E.RT..E.VDLWCIGVLC.E.LLVGNPPF.S.S.
Retrocopy LLGKVKIADFGWSVHTPSLRRKTMCGTLDYLPPEMVEQRTYSEMVDLWCIGVLC*E>LLVGNPPFKSSSY

Parental  NETYRRIVKVDLKFPPSVPVGAQDLISKLLKHNPSDRLPLAQVSAHPWVRAHSRRVLPPSA
          .ETYRRI.KVD.KFPPS.P.GAQDLISKLL...PS.RLPLAQV..HPWV.AHSRRV.PP.A
Retrocopy SETYRRILKVDVKFPPSIPLGAQDLISKLLRYQPSERLPLAQVLQHPWVQAHSRRVGPPPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_764 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013775	1 retrocopy	retro_mmur_567,
Myotis lucifugus	ENSMLUG00000003633	2 retrocopies	retro_mluc_764 , retro_mluc_798,
Myotis lucifugus	ENSMLUG00000007925	1 retrocopy	retro_mluc_1931,
Macaca mulatta	ENSMMUG00000002997	1 retrocopy	retro_mmul_2367,
Pteropus vampyrus	ENSPVAG00000016378	1 retrocopy	retro_pvam_1045,
Tursiops truncatus	ENSTTRG00000010318	1 retrocopy	retro_ttru_542,