RetrogeneDB ID: retro_ogar_811

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:26219735..26219978(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000033103
• Aliases: None
• Description: None

Sequence

>retro_ogar_811
CTGGAAGCAGGGCGGGTCACAAGGCACCATCTCAAGGAGCGGCATCCAGTGTACGTGCCCACATGCTCTGTCAGGGGAGA
AGTGCAGGAAACTCCTCCAGCAGATCCAGCTTAGCCAGAAGGAGGGGACAGCCATGGAAGTGGAAACCCCTTCAAAGCCA
GCGAGGCCTGGGGAAGCACCACCCAAACAATGAAAGAGGACAAAAGCCACCAGGATGTAGACATGAAGGATCTTGAGCAT
GAG

Alignment

ORF - retro_ogar_811 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.41 %
• Parental protein coverage: 66.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  IDAGLITRHHLKKR-ASSARANI-TLSGKKRRKLLQQIRLTQKEKAAMEVEAPSKPARTSEAQPKQQKKT
          ..AG..TRHHLK.R.ASS.RA....LSG.K.RKLLQQI.L.QKE..AMEVE.PSKPAR..EA.PKQ.K.T
Retrocopy LEAGRVTRHHLKER<ASSVRAHM<ALSGEKCRKLLQQIQLSQKEGTAMEVETPSKPARPGEAPPKQ*KRT

Parental  KA-HQDIDMKDLEDE
          KA.HQD.DMKDLE.E
Retrocopy KA<HQDVDMKDLEHE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_811 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006512	1 retrocopy	retro_amel_1386,
Bos taurus	ENSBTAG00000010465	2 retrocopies	retro_btau_1195, retro_btau_1799,
Canis familiaris	ENSCAFG00000015719	2 retrocopies	retro_cfam_1104, retro_cfam_757,
Felis catus	ENSFCAG00000025454	2 retrocopies	retro_fcat_1722, retro_fcat_773,
Macaca mulatta	ENSMMUG00000013949	4 retrocopies	retro_mmul_1186, retro_mmul_1541, retro_mmul_1785, retro_mmul_1981,
Mus musculus	ENSMUSG00000071653	2 retrocopies	retro_mmus_1809, retro_mmus_759,
Otolemur garnettii	ENSOGAG00000033103	1 retrocopy	retro_ogar_811 ,
Rattus norvegicus	ENSRNOG00000019701	4 retrocopies	retro_rnor_1066, retro_rnor_1955, retro_rnor_851, retro_rnor_883,
Sus scrofa	ENSSSCG00000023323	2 retrocopies	retro_sscr_1162, retro_sscr_1163,