RetrogeneDB ID: retro_ogar_33

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873636.1:3138589..3139963(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000029856
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001200
• Aliases: None
• Description: None

Sequence

>retro_ogar_33
ATGGGTCGCAAGAAGAAGAAGCAGCTGAAGCCGTGGTGCTGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTAT
ACAGCACCAAAAAGCAAAGCATTTTAAATGTCGTATATGTCATAAGAAATTGTATACAGGATCTGGCTTAGCTATTCATT
GCATGCAGGTACATAAAGAGACAATAGATGCTGTACCAAATGCAATACCTGGGAGAACAGACATAGAGTTGGAAATATAT
GGTATGGAAGGTATACCAGAAAAAGACATGGATGAAAGAAGAAGACGACTTCTTGAACAGAAGACACAAAAAAGTCAAAA
AAAGAAGCAACAAGATGGTTCTGATGAGTATGATGATGATGATGATTCTGCAGCCTCAACTTCATTTCATCCACAGCCTG
TTCAATCTCAACAAGGTTATAGTCCCCCAGTGGCACAGCCAGGACTGCCACCAGTTCCAGAAGCACCAGGAATGCCTCCA
GGCATACCTCCATTGATGCCAGGAATGCCACCAGTTGTGCCAGGCATGACACCTGGATTGCATCATCAGAGAAAACACAC
CCAGTCATTTTGTGGTGAAAACATAATGAAGCCAATGGGTGGAATGATGCCACCTGGACCAGGAATACCACCTCTGATGC
CTGGGATGCCACAAGGTATGCATCCCCTCATTCCACGTCCTGGAATCCCTCCAATGACCCAAGCACAGGCTGTTTCAGTG
CCAGGTATTCTTAATAGACCACCTGCAATAATAGCAACAGTACCTGTGCCACAGCCTCCTGTTACTAAGCCTCTTTTCCC
AAGTGCTGGACAGGCTCAGGCAGCTGTCCAAGGACCTGTTGGTACAGATTTCAAGCCTTTAAATAGTACTTCTGCAACAA
CTACAGAACCCCCAAAGCCTACGTTCCCTGCTTATACACAGTCTACAGCTTCAACCACTAGTACAACAAATAGTACTGCA
GCTAAATCAGCAACTTCAATAACAGGTAAGCCTGCTACACTGACGACAACTAGTGTAACCCGTAAGTTGATCTATCCAGA
TGAGGATATATCACTGGAGGAAAGAAGGGCACAGTTACCTAAATATCAATGTAATCTTCCTCGACCAAGACAGGCCCCCA
TTGGTAATCCACCAGTTGGACCAATTGGAGGTATGATGCCACCACAACCAGGCATCCCACAGCAACAAGGAATGAGACCA
CCAATGCCACCTCATGGTCAGTATGGTGGTCATCGTCAGGGCATGCCAGGTTACCTTCCTGGTGCTATGCCGCCATATGG
GCAGGGATGGCCAATGGTACCCCCTTACCAAGGTGGGCCTCCTCGACCTCCGATGGGAATGAGACCTCCTGTAATGTTGC
AAGGTGGCCGCTAC

Alignment

ORF - retro_ogar_33 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.05 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIP
          MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKC.ICHKKLYTG.GLAIHCMQVHKETIDAVPNAIP
Retrocopy MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCRICHKKLYTGSGLAIHCMQVHKETIDAVPNAIP

Parental  GRTDIELEIYGMEGIPEKDMDERRR-LLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYI
          GRTDIELEIYGMEGIPEKDMDERRR.LLEQKT.....K.Q........D.......S.......PQ....
Retrocopy GRTDIELEIYGMEGIPEKDMDERRRRLLEQKT----QKSQKKKQQDGSDEYDDDDDSAASTSFHPQ----

Parental  PPMAQPGLPPVPGAPGMPP--GIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGM
          P...Q.G..P....PG.PP....P...PG.PPLMPGMPPV.PGM.PGLHHQRK.TQSFCGENIM.PMGGM
Retrocopy PVQSQQGYSPPVAQPGLPPVPEAPGMPPGIPPLMPGMPPVVPGMTPGLHHQRKHTQSFCGENIMKPMGGM

Parental  MPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQA
          MPPGPGIPPLMPGMP.GM.P..PRPGIPPMTQAQAVS.PGILNRPPA..ATVP.PQPPVTKPLFPSAGQA
Retrocopy MPPGPGIPPLMPGMPQGMHPLIPRPGIPPMTQAQAVSVPGILNRPPAIIATVPVPQPPVTKPLFPSAGQA

Parental  QAAVPGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSK
          QAAV.GPVGTDFKPLNST.ATTTEPPKPTFPAYTQSTASTTSTTNSTAAK.A.SIT.KPATLTTTS.T.K
Retrocopy QAAVQGPVGTDFKPLNSTSATTTEPPKPTFPAYTQSTASTTSTTNSTAAKSATSITGKPATLTTTSVTRK

Parental  LIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHH
          LI.PDEDISLEERRAQLPKYQ.NLPRP.QAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGH.
Retrocopy LIYPDEDISLEERRAQLPKYQCNLPRPRQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHR

Parental  QGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY
          QGMPGYLPGAMPPYGQG.PMVPPYQGGPPRPPMGMRPPVM.QGGRY
Retrocopy QGMPGYLPGAMPPYGQGWPMVPPYQGGPPRPPMGMRPPVMLQGGRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_33 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001728	1 retrocopy	retro_cpor_1464,
Echinops telfairi	ENSETEG00000003828	1 retrocopy	retro_etel_883,
Homo sapiens	ENSG00000010244	1 retrocopy	retro_hsap_2373,
Myotis lucifugus	ENSMLUG00000016085	1 retrocopy	retro_mluc_322,
Nomascus leucogenys	ENSNLEG00000005954	1 retrocopy	retro_nleu_362,
Otolemur garnettii	ENSOGAG00000001200	2 retrocopies	retro_ogar_33 , retro_ogar_751,
Pongo abelii	ENSPPYG00000008161	1 retrocopy	retro_pabe_2144,
Pan troglodytes	ENSPTRG00000008989	1 retrocopy	retro_ptro_1735,
Ictidomys tridecemlineatus	ENSSTOG00000000712	2 retrocopies	retro_itri_1800, retro_itri_1875,