RetrogeneDB ID: retro_mluc_322

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:12533675..12535016(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029344
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016085
• Aliases: None
• Description: None

Sequence

>retro_mluc_322
ATGGGTCGCAAGAGGAAGAAGCAGCTGAAGCCGTGGTGCTGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTAT
ACAGCACCAAAAAGCAAAACATTTTAAATGCCATATATGTCATAAGAAGCTGTACAGAGGACCTGGCTTGGCTACACATT
GCAGCCAGGTGCATAAAAAGACAATAGATGCTGTACCAAATGCAATACCTGGGAGAACAGACATAGGGTTGGACATATGT
GGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGAAGACGACTTCTTGAACAGAAAACACAGGAGAGTCAAAAAAG
GAAGCAACAAGATGATTCTGATGAGTATGATGATGACGACTCTGCAGCTTCAACTTCATTTCAACCACAGCCTGTTCAAC
CCCAACAAGGCTATCTACACCCAATGGCACAGCCAGGACTACCACCAGTTCTGGGAGCACCAGGAATGGCTCCAGGCATA
CCTCCATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAGCTATGCCAGGCATGCCACCTGGAATGATGCC
AATGGGTAGAATGATGCCACCTGGACCAGGAATACCACCTCTAATGCCTGGTATGCCACTAGGTATGCCCCCTCCTGTTC
CACGTCCTGGAATTCCTCCAATGACTCAAGCACAGGCTGTTTCAGCACCAGGTATTCTTAATAGACCACCTGCACCAACA
GCAACAGTTCCTGCTCCACAGCCTCCAGTTACTAAGCCTCTTTTCCCCAGTGCCGGACAGGCTCAGGCAACTGTCCAAGG
ACCTGTTGGTACAGATTTCAAGCCCTTAAGTAGTACCCCTGCAACAACTACAGAACCCCCGAAGCCTACATTTCCTGCTT
ATACACAGTCTACAGCTTCAACCACTAGTACAACAAATAGCACTGCAGCTAAACCAGCGGCATCAATAGCAAGTAAGCCT
GCTACTCTTACGACAACCAGTGCAACCAGTAAGTTGATCTATCCAGATGAGGATATATCGTTGGAAGAAAGAAGGGCACA
GTTACCTAAATATCAACGTAATCTTCCTCTTCCAGGACAGACTCCCATTGGTAATCCACCAGTTGGACCAATTGGAGCTA
TGATGCCACCACAGCCAGGCATCCCACAACAACAAGGAATGAGACCCCCAATGCCACCTCATGGTCAGTATGGTGGTCAT
CATCAAGGCATGCCAGGTTACCTTCCTGGTGCTATGCCGCCATATGGGCAGGGACTGCCAATGGTGCCCCCTTATCAAGG
TGGGCCTCCTAGACCTCCAATGGGAATGAGACCTCCTGTAATGTCGCAAGGTGGCCGTTAC

Alignment

ORF - retro_mluc_322 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.34 %
• Parental protein coverage: 56.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPL
          MMPMG.MMPPGPGIPPLMPGMP.GMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPL
Retrocopy MMPMGRMMPPGPGIPPLMPGMPLGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPL

Parental  FPSAGQAQAAVQGPVGTDFKPLSSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLT
          FPSAGQAQA.VQGPVGTDFKPLSSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASI.SKPATLT
Retrocopy FPSAGQAQATVQGPVGTDFKPLSSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASIASKPATLT

Parental  TTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQTPIGNPPVGPIGAMMPPQPGIPQQQGMRPPMPPH
          TTSATSKLI.PDEDISLEERRAQLPKYQRNLP.PGQTPIGNPPVGPIGAMMPPQPGIPQQQGMRPPMPPH
Retrocopy TTSATSKLIYPDEDISLEERRAQLPKYQRNLPLPGQTPIGNPPVGPIGAMMPPQPGIPQQQGMRPPMPPH

Parental  GQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY
          GQYGGHHQGMPGYLPGAMPPYGQG.PMVPPYQGGPPRPPMGMRPPVMSQGGRY
Retrocopy GQYGGHHQGMPGYLPGAMPPYGQGLPMVPPYQGGPPRPPMGMRPPVMSQGGRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_322 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001728	1 retrocopy	retro_cpor_1464,
Echinops telfairi	ENSETEG00000003828	1 retrocopy	retro_etel_883,
Homo sapiens	ENSG00000010244	1 retrocopy	retro_hsap_2373,
Myotis lucifugus	ENSMLUG00000016085	1 retrocopy	retro_mluc_322 ,
Nomascus leucogenys	ENSNLEG00000005954	1 retrocopy	retro_nleu_362,
Otolemur garnettii	ENSOGAG00000001200	2 retrocopies	retro_ogar_33, retro_ogar_751,
Pongo abelii	ENSPPYG00000008161	1 retrocopy	retro_pabe_2144,
Pan troglodytes	ENSPTRG00000008989	1 retrocopy	retro_ptro_1735,
Ictidomys tridecemlineatus	ENSSTOG00000000712	2 retrocopies	retro_itri_1800, retro_itri_1875,