RetrogeneDB ID: retro_etel_883

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_179723:3045..3499(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF207
• Ensembl ID: ENSETEG00000003828
• Aliases: None
• Description: zinc finger protein 207 [Source:HGNC Symbol;Acc:12998]

Sequence

>retro_etel_883
ACCACCCACACCGGCAGCAACAGTTCTCCTCCCCCGCCGCCAGTTACCAAGCCTCTTTTCCCCAGGTGCTGTGCAGGCTC
AGGCCGCTGTCCAAGAACCTGTCGCTACAGATGTCAAGCCCTTCAACGGTACCCCAGCAGCAACTACAGAATCCCCAAAG
CCTACATTCCCTGCTGATACTCAATCTGCAGCTTCAACCCCAAGTACAACAAATAGTTCTGCAACTAAACCAGTGGCTTC
AATAACAAGTAAGCCTTCTACCCTGACAGCAACCAATAAGTTGATCCGCCCAGATGAGGCTATATCCCTGGAAAAGAGAA
GGGCATGGATACCCAAATATCAGCGGGATCTTCCTCAACCAGGAGAGTCTCCCATTTGGAATCCCCCTGTTGGACCAATT
GGAGGTCTGATGCCACCATAGCCAGGCATCCCACCGTAACAAGGACTGAGACCC

Alignment

ORF - retro_etel_883 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.74 %
• Parental protein coverage: 52.38 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSSTASSNSESLSASSKALFP-STAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTST
          ...T.S..S.......K.LFP....QAQAAVQ.PV.TD.KP.N.TPA.TTE.PKPTFPA.TQS.AST.ST
Retrocopy TTHTGSNSSPPPPPVTKPLFP>GAVQAQAAVQEPVATDVKPFNGTPAATTESPKPTFPADTQSAASTPST

Parental  TNSTAAKPVASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGM
          TNS.A.KPVASITSKP.TLT...AT.KLI.PDE.ISLE.RRA..PKYQR.LP.PG..PI.NPPVGPIGG.
Retrocopy TNSSATKPVASITSKPSTLT---ATNKLIRPDEAISLEKRRAWIPKYQRDLPQPGESPIWNPPVGPIGGL

Parental  MPPQPGIPQQQGMRP
          MPP.PGIP..QG.RP
Retrocopy MPP*PGIPP*QGLRP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_883 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001728	1 retrocopy	retro_cpor_1464,
Echinops telfairi	ENSETEG00000003828	1 retrocopy	retro_etel_883 ,
Homo sapiens	ENSG00000010244	1 retrocopy	retro_hsap_2373,
Myotis lucifugus	ENSMLUG00000016085	1 retrocopy	retro_mluc_322,
Nomascus leucogenys	ENSNLEG00000005954	1 retrocopy	retro_nleu_362,
Otolemur garnettii	ENSOGAG00000001200	2 retrocopies	retro_ogar_33, retro_ogar_751,
Pongo abelii	ENSPPYG00000008161	1 retrocopy	retro_pabe_2144,
Pan troglodytes	ENSPTRG00000008989	1 retrocopy	retro_ptro_1735,
Ictidomys tridecemlineatus	ENSSTOG00000000712	2 retrocopies	retro_itri_1800, retro_itri_1875,