RetrogeneDB ID: retro_ogar_2257

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873607.1:1525211..1525937(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032979
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ANXA5
• Ensembl ID: ENSOGAG00000003878
• Aliases: None
• Description: annexin A5 [Source:HGNC Symbol;Acc:543]

Sequence

>retro_ogar_2257
CTCTTTGGCAGGGAGCTTTTGGATGACCTGAAATCAGAATTAACCGGACAATCTGAAAAATTAATTGTGGCTCTGATGAA
ACCCCTCTCAGCTTTACGCGCCTATGAACTGAAGCACGCCCTTAAGGGAGCTGGGACCAATGACAAAGTCCTGGCAGAAA
TTACTGCTTCAAGGACACCTGAAGAGCTAAGAGGCATAAAACCAGTCTGTGAAGAAGAATATGGCCCGAGCCTGGAGGAT
GACGTGGCTGGCGACTCTTCAGGTTTCTACCAGAGGATGTTGGTGGTTCTCCTTCAGGCTAACAGAGACCCTGATGCCAG
AGTTGATGAAACTCAAGTTGAACAAGATGCTCAGGCTCTGTTTCGGGCTGGAGAACCTAAATGGGGGACAGATGAAGAAA
AGCTTATCACCATCCTGGGAACACGTAGTGTGTCTCATCTGAGAAGGGTGTTTGACAAATACATGACTAGATCAGGATTT
CACATTGAGAAAACTATTGACCGGGAGACTTCTGGCAATTTGGAGCAACTACTTCTTGCTGTTGTGAAATCTATTCGAAG
TATTCCTGCCTACCTTGCTGAGACCTTCTACTATGCTCTGGAGGGAGCTGGGACAGATGATCACACACTCATCAGAGTCG
TGATGTCCAGGAGTGAGACTGATCTGTTTAACATTAGAAAGGAGTTTTGGAAGAGTTTTGCCACCTCTCTTTATTCCATG
ATTGAG

Alignment

ORF - retro_ogar_2257 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.95 %
• Parental protein coverage: 80.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELKAIKQVY
          LFGR.LLDDLKSELTG..EKLIVALMKP.....AYELKHALKGAGTN.KVL.EI.ASRTPEEL..IK.V.
Retrocopy LFGRELLDDLKSELTGQSEKLIVALMKPLSALRAYELKHALKGAGTNDKVLAEITASRTPEELRGIKPVC

Parental  EEEYGSSLEDDVVGDTSGFYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFRAGELKWGTDEEKFITILG
          EEEYG.SLEDDV.GD.SGFYQRMLVVLLQANRDPDA..DE.QVEQDAQALFRAGE.KWGTDEEK.ITILG
Retrocopy EEEYGPSLEDDVAGDSSGFYQRMLVVLLQANRDPDARVDETQVEQDAQALFRAGEPKWGTDEEKLITILG

Parental  TRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTL
          TRSVSHLRRVFDKYMT.SGF.IE.TIDRETSGNLEQLLLAVVKSIRSIPAYLAET.YYA..GAGTDDHTL
Retrocopy TRSVSHLRRVFDKYMTRSGFHIEKTIDRETSGNLEQLLLAVVKSIRSIPAYLAETFYYALEGAGTDDHTL

Parental  IRVVVSRSEVDLFNIRKEFRKNFATSLYSMIK
          IRVV.SRSE.DLFNIRKEF.K.FATSLYSMI.
Retrocopy IRVVMSRSETDLFNIRKEFWKSFATSLYSMIE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2257 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021746	1 retrocopy	retro_btau_308,
Echinops telfairi	ENSETEG00000002187	3 retrocopies	retro_etel_1728, retro_etel_370, retro_etel_901,
Macropus eugenii	ENSMEUG00000003853	3 retrocopies	retro_meug_1071, retro_meug_1782, retro_meug_985,
Otolemur garnettii	ENSOGAG00000003878	1 retrocopy	retro_ogar_2257 ,
Otolemur garnettii	ENSOGAG00000009311	1 retrocopy	retro_ogar_108,
Otolemur garnettii	ENSOGAG00000009952	1 retrocopy	retro_ogar_3510,
Otolemur garnettii	ENSOGAG00000011321	1 retrocopy	retro_ogar_2201,