RetrogeneDB ID: retro_ogar_108

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873739.1:1175496..1176537(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000031463
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000009311
• Aliases: None
• Description: None

Sequence

>retro_ogar_108
ATGGCAATGGTATCAGAATTCCTCAAGCAGGCCTGGTTCATTGAAAATGAAGAGCAGCAGTACCTTAATACTGTGAAGTC
ATCCAAAGGTGGTCCTGGGTTGGCGGTGAGCCCCTATCCTTCCTTCAATCCATCTGCAGATGTTGCGGCCATCCACCAAG
CCCTGACGGTTAAAGGTGTAGATGAAGGGACCATCATTGACATACTAACTAAGAGAACCAATGCTCAGCGTCAACAGATC
AAAGCAGCGTATCTCCAGGAGAAGGGAAAGCCCCTGGATGAAATGCTGAAGAAGGCCCTTACAGGCCACCTGGAGGAAGT
TGCTTTAGCACTGCTAAAAACCCCAGCACAGTTCGATGCTGATGAACTCCGTGCTGCCATGAAGGGCCTTGGAACTGATG
AAGACACTCTGATTGAAATATTGACATCAAGAGGTAACAAAGAAATCAGAGAAATTAACAGAGTCTACAGAGATGAACTG
AAAAGAGATCTGGCCAAAGATATAACCTCAGACACATGTGGAGATTTCCGGAATGCTTTGCTTTCTCTTGCTAAGGGTGA
CCGAAGTGAGGATTTCGGTGTAAATGAAGACTTGGCTGATACGGATGCCCGGGCCTTATATGAAGCAGGAGAAAAGAGAA
AGGGGACAGATACCAACGTGTTCGTTACCATTCTTACCACCAGGAGCTACCCCCATCTTCGCAGAGTGTTTCAGAAATAT
ACCAAGTACAGTAAGCATGACATGAACAAAGCTCTGGACCTGGAGATGAAAGGTGACATTGAGAAATGTCTCACAGCCAT
TGTGAAGTGCGCTACCAGCAAACCAGCTTTCTTTGCCGAGAAGCTTCATCATGCCATGAAGGGTGTTGGAACTCGTCATA
AGGAATTGATCAGGATTATGGTTTCCCGTTCTGAAGTTGACACGAATGATATCAAGGCATTCTATCAGAAGAAGTATGGC
GTCTCTCTTTGCCAAGCCATCATGGATGAAACCAAGGGAGATTATGAAAAAATCTTGGTGTCTCTTTGTGGAGGAAACTA
A

Alignment

ORF - retro_ogar_108 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.27 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAMVSEFLKQAWFIENEEQQYLNTVKSSKGGPGSAVSPYPSFNPSADVAAIHQALTVKGVDEGTIIDILT
          MAMVSEFLKQAWFIENEEQQYLNTVKSSKGGPG.AVSPYPSFNPSADVAAIHQALTVKGVDEGTIIDILT
Retrocopy MAMVSEFLKQAWFIENEEQQYLNTVKSSKGGPGLAVSPYPSFNPSADVAAIHQALTVKGVDEGTIIDILT

Parental  KRTNAQRQQIKAAYLQEKGKPLDEMLKKALTGHLEEVALALLKTPAQFDADELRAAMKKGLGTDEDTLIE
          KRTNAQRQQIKAAYLQEKGKPLDEMLKKALTGHLEEVALALLKTPAQFDADELRAAMK.GLGTDEDTLIE
Retrocopy KRTNAQRQQIKAAYLQEKGKPLDEMLKKALTGHLEEVALALLKTPAQFDADELRAAMK-GLGTDEDTLIE

Parental  ILTSRGNKEIREINRVYRDELKRDLAKDITSDTSGDFRNALLSLAKGDRSEDFGVNEDLADTDARALYEA
          ILTSRGNKEIREINRVYRDELKRDLAKDITSDT.GDFRNALLSLAKGDRSEDFGVNEDLADTDARALYEA
Retrocopy ILTSRGNKEIREINRVYRDELKRDLAKDITSDTCGDFRNALLSLAKGDRSEDFGVNEDLADTDARALYEA

Parental  GEKRKGTDTNVFVTILTTRSYPHLRRVFQKYTKYSKHDMNKALDLEMKGDIEKCLTAIVKCATSKPAFFA
          GEKRKGTDTNVFVTILTTRSYPHLRRVFQKYTKYSKHDMNKALDLEMKGDIEKCLTAIVKCATSKPAFFA
Retrocopy GEKRKGTDTNVFVTILTTRSYPHLRRVFQKYTKYSKHDMNKALDLEMKGDIEKCLTAIVKCATSKPAFFA

Parental  EKLHHAMKGVGTRHKELIRIMVSRSEVDMNDIKAFYQKKYGVSLCQA-XDETKGDYEKILVSLCGGN
          EKLHHAMKGVGTRHKELIRIMVSRSEVD.NDIKAFYQKKYGVSLCQA..DETKGDYEKILVSLCGGN
Retrocopy EKLHHAMKGVGTRHKELIRIMVSRSEVDTNDIKAFYQKKYGVSLCQAIMDETKGDYEKILVSLCGGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_108 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015978	1 retrocopy	retro_btau_544,
Echinops telfairi	ENSETEG00000018299	1 retrocopy	retro_etel_573,
Otolemur garnettii	ENSOGAG00000003878	1 retrocopy	retro_ogar_2257,
Otolemur garnettii	ENSOGAG00000009311	1 retrocopy	retro_ogar_108 ,
Otolemur garnettii	ENSOGAG00000009952	1 retrocopy	retro_ogar_3510,
Otolemur garnettii	ENSOGAG00000011321	1 retrocopy	retro_ogar_2201,
Pteropus vampyrus	ENSPVAG00000006489	2 retrocopies	retro_pvam_536, retro_pvam_713,