RetrogeneDB ID: retro_mputfur_944

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896977.1:5946619..5947316(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EEF1G
• Ensembl ID: ENSMPUG00000013942
• Aliases: None
• Description: eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213]

Sequence

>retro_mputfur_944
ATGGCAGCTGGCACCGTGTTCATGTACCCTGAAACCTGGAGGACCGTCAAGGCTCTCATTGCTGCTCAGTCCAGAGGGGC
TCAGGTCTGTGTGCTCTCTACACTACCCGACTTCCACTTTAGCCAAACCAAACGCAGCCCTGAATTTCTCTGTAAATGTC
CTGCTGGCAAGCTTCCAGCATTTGAGGGCGATGATGGATTCTGTGTGTTTGACAGTGATGCCATTGCTTAGTATGTGAGC
AATGAGGAGCTGTGGGGAAGTTCTCCAGAGACAACAGCCCAGGAGGTACAGTGTGTGAGCTTGGCTGATAGCGATATAGT
GCTGCCCACCAGCAGCCGGGTGGGCCCCACCTCAGGCATCATGCACCACAACAAGCAGGCCCCAGAGAATGCAAAGGAGG
AAGCGAAGCAACTTCTGGGGTTACTGGATGCTCCCTTGAAGACAAGGACTCTCCTGGTGGTCACCTGTGTTGACATTGGC
TGACATCACGATTGTCTGCACCCTGCTGTGGCTCTAGAAACAGGTCCTGGAGCCTTCTCTCTGCCAGGCCTTCCCCAATA
CCAACTGCTGCTTCCTCACCTGCGTTGACCAACCCCAGTTCAGGGCTGTCTTGGGGGAGGTGAAACTCTGTGAAAAGATG
GCCCAGTCTGTTGCTAAAAAGTTTGCAGAGAGCCAGCCTGAAAAGGACATATCCCGG

Alignment

ORF - retro_mputfur_944 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.68 %
• Parental protein coverage: 53.09 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVF
          MAAGT...YPE.WR..KALIAAQ..GAQV.VLS..P.FHF.QT.R.PEFL.K.PAGK.PAFEGDDGFCVF
Retrocopy MAAGTVFMYPETWRTVKALIAAQSRGAQVCVLSTLPDFHFSQTKRSPEFLCKCPAGKLPAFEGDDGFCVF

Parental  ESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILG
          .S.AIA.YVSNEEL.GS.PE..AQ.VQ.VS.ADSDIV.P.S..V.PT.GIMHHNKQA.ENAKEE....LG
Retrocopy DSDAIA*YVSNEELWGSSPETTAQEVQCVSLADSDIVLPTSSRVGPTSGIMHHNKQAPENAKEEAKQLLG

Parental  LLDAHLKTRTFLV-GERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKL
          LLDA.LKTRT.LV.....TLADIT.VCTLLWL.KQVLEPS..QAFPNTN..FLTC..QPQFRAVLGEVKL
Retrocopy LLDAPLKTRTLLV>SPVLTLADITIVCTLLWL*KQVLEPSLCQAFPNTNCCFLTCVDQPQFRAVLGEVKL

Parental  CEKMAQFDAKKFAESQPKKDTPR
          CEKMAQ..AKKFAESQP.KD..R
Retrocopy CEKMAQSVAKKFAESQPEKDISR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_944 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_944 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 40 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006745	1 retrocopy	retro_amel_772,
Canis familiaris	ENSCAFG00000015834	6 retrocopies	retro_cfam_1241, retro_cfam_1398, retro_cfam_1862, retro_cfam_478, retro_cfam_638, retro_cfam_653,
Callithrix jacchus	ENSCJAG00000018949	6 retrocopies	retro_cjac_1464, retro_cjac_1770, retro_cjac_1942, retro_cjac_3147, retro_cjac_841, retro_cjac_874,
Equus caballus	ENSECAG00000014334	1 retrocopy	retro_ecab_419,
Latimeria chalumnae	ENSLACG00000014700	1 retrocopy	retro_lcha_82,
Loxodonta africana	ENSLAFG00000003339	1 retrocopy	retro_lafr_381,
Monodelphis domestica	ENSMODG00000007691	1 retrocopy	retro_mdom_68,
Mustela putorius furo	ENSMPUG00000013942	2 retrocopies	retro_mputfur_427, retro_mputfur_944 ,
Nomascus leucogenys	ENSNLEG00000003528	2 retrocopies	retro_nleu_1510, retro_nleu_681,
Oryctolagus cuniculus	ENSOCUG00000020959	3 retrocopies	retro_ocun_1693, retro_ocun_369, retro_ocun_693,
Pongo abelii	ENSPPYG00000029434	5 retrocopies	retro_pabe_2237, retro_pabe_2378, retro_pabe_2409, retro_pabe_2473, retro_pabe_3690,
Pan troglodytes	ENSPTRG00000003768	3 retrocopies	retro_ptro_1879, retro_ptro_2017, retro_ptro_3159,
Rattus norvegicus	ENSRNOG00000020075	8 retrocopies	retro_rnor_1312, retro_rnor_2126, retro_rnor_2235, retro_rnor_2269, retro_rnor_2468, retro_rnor_2617, retro_rnor_2928, retro_rnor_979,