RetrogeneDB ID: retro_mputfur_56

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897003.1:2798823..2800479(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019174
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: EWSR1
• Ensembl ID: ENSMPUG00000013432
• Aliases: None
• Description: EWS RNA-binding protein 1 [Source:HGNC Symbol;Acc:3508]

Sequence

>retro_mputfur_56
ATGCCAGTCCACATTCAACATTCAAAATTCATTAAAGTGGGAACGAGAAGGAAGGAGAGAAAATGGCGTCCACAAATTAC
AGTACATACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCATACACCGCCTAACCCACTCAAGGATATGCACAGACCAC
CCAGGCATATGGGCAGCAAAGTTATGGAACCTATGGACAGCCCACTCATGTCAGCTATACCCAAGCTCAGACCACTGCTA
CGTATGGGCAGACCACCTATGCAACTTCTTATGGACAGCCTCCTGCTGGTTATACTACTCCAACCCCAGGCATACAGCCA
GCCTGTCCAGGGTTATGGCACTGGTGCTTACGATACCACCACTGCTACAGTCACTACCACCCAGGCCTTCTATGCAGCTC
AGTCTGCATATGGCATTCAACCTGCTTACCCAGCCTATGGGCAGCAGCCGGCAGCCACCGCACCTGCAAGACTGCAGGAT
GGTAACAAACCCACTGAGACTAGTCAACCTCAATATAGCACAGGGGGTTACAACCAGTCCAGCCTAGGATATGGACAGAG
TAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCATGGCACCACCATCTTATCCTCCTACCAGCT
ACTCCTCTACACAGCTGACTAGTTATGATCAGAGCAGTTACTCGCAGCAGAACACCTATGGCAAGCCGAGCAGCTATGGA
CAGCAGAGCAGCTATGGTCAACAAAGCAGCTGTGGGCAGCAGCCGCCCACTAGTTATCCCCCCCAAACTGGATCCTATAG
CCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCCACAGGACCACCCCAGTAGCA
TGGGTGTTAATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAAAACTGGAGCATGAGTGGCCCTGATAACCGGGGC
AGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGTTGGGCAAGGAGGAGGACACAGTGGAATGGGTGCTGGAGA
GCAAGGTAGCTTCAATAAGCCTGGTGGACCCATGGATGAAGGAACAGATCTTGATCTAGGCCCACCTGTAGATCCAGATG
AAGAGTCGGACAACAGTGCAATTTATGTGCAAGGCTTAAATGGCAATGTGACTTTAGATGATCTGGCTGACTTTTTTAAG
CAGTGTGGAGTTGTTAAGATGAATAAGAGAACCGGACAACCCATGATTCATATCTACTTGGACGAGGAAACAGGAAAGCC
CAAAGGTGACGCTACCGTTTCCTATGAAGACCCGCGAACTGCCAAGACTGCTGTGGAGTGGTTTGATGGGAAAGATTTTC
AAGGGAGCAAACTTAAGGTATCTCTTGTTTGGAAGAAGCCTCCAATGAGGAGGGGTGGCATGCCGCCTCGTGAGGGCAGA
GGGATGCCGCCGCCCCTACGTGCAGTTCCAGGAGGCCCAGGAGGTCCTGGAGGCCCCATGGGTCCCTTGGGAGGCCGTGG
AGGAGACAGAGGTGTCTTTCCCCCAAGAGAGCCCCGGGGTTCCCTAGGGAACCCATCCGGAGGAGGAAATGTCCAGCACG
GAGCTGGAGACTGGCAGTGCTCCAATCCGGGTTGTGGAAACCAGAACTTTGCCTAG

Alignment

ORF - retro_mputfur_56 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.39 %
• Parental protein coverage: 68.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPAATAPARPQDGNKPAETSQPQ
          PQAYSQPVQGYGTGAYDTTTATVTTTQA.YAAQSAYG.QPAYPAYGQQPAATAPAR.QDGNKP.ETSQPQ
Retrocopy PQAYSQPVQGYGTGAYDTTTATVTTTQAFYAAQSAYGIQPAYPAYGQQPAATAPARLQDGNKPTETSQPQ

Parental  SSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQ
          .STGGYNQ.SLGYGQSNYSYPQVPGSYPMQPV.APPSYPPTSYSSTQ.TSYDQSSYSQQNTYG.PSSYGQ
Retrocopy YSTGGYNQSSLGYGQSNYSYPQVPGSYPMQPVMAPPSYPPTSYSSTQLTSYDQSSYSQQNTYGKPSSYGQ

Parental  QSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENR
          QSSYGQQSS.GQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSF.QDHPSSMGV.GQESGGFSGPGEN.
Retrocopy QSSYGQQSSCGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFPQDHPSSMGVNGQESGGFSGPGENW

Parental  SMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSA
          SMSGPDNRGRGRGGFDRGGMSR.G.GGG..GMG.AGE.G.FNKPGGPMDEG.DLDLGPPVDPDE.SDNSA
Retrocopy SMSGPDNRGRGRGGFDRGGMSRVGQGGGHSGMG-AGEQGSFNKPGGPMDEGTDLDLGPPVDPDEESDNSA

Parental  IYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG
          IYVQGLN.NVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD.ETGKPKGDATVSYEDP.TAK.AVEWFDG
Retrocopy IYVQGLNGNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDEETGKPKGDATVSYEDPRTAKTAVEWFDG

Parental  KDFQGSKLKVSLARKKPPMNSLRGGMPPREGRGMPPPLRAGPGGPGGPGGPMGRMGGRGGDRGGFPPRGP
          KDFQGSKLKVSL..KKPPM...RGGMPPREGRGMPPPLRA.PGGPGGPGGPMG..GGRGGDRG.FPPR.P
Retrocopy KDFQGSKLKVSLVWKKPPMR--RGGMPPREGRGMPPPLRAVPGGPGGPGGPMGPLGGRGGDRGVFPPREP

Parental  RGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFA
          RGS.GNPSGGGNVQH.AGDWQC.NPGCGNQNFA
Retrocopy RGSLGNPSGGGNVQHGAGDWQCSNPGCGNQNFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_56 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_56 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012160	8 retrocopies	retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus	ENSCJAG00000019987	4 retrocopies	retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus	ENSCPOG00000009502	1 retrocopy	retro_cpor_1353,
Felis catus	ENSFCAG00000004243	1 retrocopy	retro_fcat_519,
Macropus eugenii	ENSMEUG00000008703	1 retrocopy	retro_meug_1424,
Myotis lucifugus	ENSMLUG00000012058	1 retrocopy	retro_mluc_328,
Monodelphis domestica	ENSMODG00000008679	1 retrocopy	retro_mdom_279,
Mustela putorius furo	ENSMPUG00000013432	2 retrocopies	retro_mputfur_56 , retro_mputfur_572,
Mus musculus	ENSMUSG00000009079	1 retrocopy	retro_mmus_1379,
Oryctolagus cuniculus	ENSOCUG00000004432	2 retrocopies	retro_ocun_1346, retro_ocun_242,
Ictidomys tridecemlineatus	ENSSTOG00000023177	1 retrocopy	retro_itri_1892,