Parental gene:

EWSR1, ENSFCAG00000004243

Aliases:None
Description:EWS RNA-binding protein 1 [Source:HGNC Symbol;Acc:3508]
Organism:Cat (Felis catus)
Coordinates:D3:20641983..20668580(+)


>ENSFCAG00000004243
TACAGTACCTACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCGCCCAGCCCACTCAAGGATATGCACAGAC
CACCCAGGCATATGGGCAGCAAAGTTATGGAACCTATGGACAGCCCACTGATGTCAGCTATACCCAGGCTCAGACCACTG
CGACCTATGGGCAGACTGCCTATGCAACTTCTTATGGACAACCTCCTGCTGTAGAAGGGACCAGTACAGGTTATACTACT
CCAACTGCCCCCCAGGCGTACAGCCAGCCTGTCCAGGGGTACGGCTCTGGTGCTTATGATACCACCACTGCTACGGTCAC
TACCACCCAGGCCTCCTATGCAGCCCAGTCTGCATATGGCACTCAGCCTGCTTACCCAGCCTATGGGCAGCAGCCGGCAG
CCACTGCACCTGCAAGACCGCAGGATGGTAACAAACCCGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTACAAC
CAGCCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACGGC
ACCACCATCTTATCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACA
CCTATGGGCAGCCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCGCCCACTAGT
TATCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTC
ATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGA
GCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGA
GGACGCGGTGGAATGGGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGACGAAGGACCAGATCTTGA
TCTAGGCCCACCTGTAGATCCAGATGAAGACTCTGACAACAGTGCAATTTATGTGCAAGGCTTAAATGACAATGTGACTC
TGGATGATCTGGCAGACTTCTTTAAGCAGTGTGGAGTTGTTAAGATGAACAAGAGAACCGGACAACCCATGATCCATATC
TACTTGGACAAGGAAACAGGAAAGCCCAAAGGCGATGCTACAGTGTCCTATGAAGACCCACCAACTGCCAAGGCGGCCGT
GGAGTGGTTTGATGGGAAAGATTTTCAAGGGAGCAAACTTAAGGTTTCTCTTGCTCGGAAGAAGCCTCCAATGAACAGCA
TGCGGGGTGGTATGCCTCCCCGTGAGGGCCGAGGGATGCCGCCACCGCTCCGTGGAGGTCCAGGGGGCCCAGGAGGTCCT
GGGGGCCCCATGGGTCGCATGGGAGGCCGTGGAGGAGACAGAGGTGGCTTTCCCCCAAGAGGGCCCCGGGGTTCCCGGGG
GAACCCATCCGGAGGAGGAAACGTCCAGCACCGAGCTGGAGACTGGCAGTGCCCCAATCCGGGGTGTGGAAACCAGAACT
TCGCCTGGAGAACAGAATGCAACCAGTGTAAGGCCCCGAAGCCTGAAGGCTTCCTTCCACCACCCTTTCCACCCCCGGGT
GGTGACCGTGGCAGAGGTGGCCCTGGTGGCATGCGAGGAGGAAGAGGCGGCCTCATGGACCGCGGTGGTCCTGGTGGAAT
GTTCAGAGGTGGCCGTGGTGGAGACAGAGGTGGTTTCCGTGGTGGCCGGGGCATGGACCGAGGTGGCTTTGGTGGAGGAA
GACGAGGTGGCCCCGGTGGGCCCCCTGGGCCTTTGATGGAACAGATGGGAGGCAGAAGAGGCGGGCGTGGAGGCCCCGGG
AAAATGGATAAAGGCGAGCACCGTCAGGAACGCAGAGACCGGCCCTAC

Library Parental gene expression (RPM)
SRP017611_liver 71 .47 RPM
SRP017611_kidney 142 .12 RPM
SRP017611_brain 105 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012160 ortholog_one2one 8 retrogenes
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG00000019987 ortholog_one2many 4 retrogenes
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus ENSCPOG00000009502 ortholog_one2one 1 retrogene
retro_cpor_1353,
Macropus eugenii ENSMEUG00000008703 possible_ortholog 1 retrogene
retro_meug_1424,
Myotis lucifugus ENSMLUG00000012058 ortholog_one2many 1 retrogene
retro_mluc_328,
Monodelphis domestica ENSMODG00000008679 possible_ortholog 1 retrogene
retro_mdom_279,
Mustela putorius furo ENSMPUG00000013432 ortholog_one2one 2 retrogenes
retro_mputfur_56, retro_mputfur_572,
Oryctolagus cuniculus ENSOCUG00000004432 possible_ortholog 2 retrogenes
retro_ocun_1346, retro_ocun_242,
Ictidomys tridecemlineatus ENSSTOG00000023177 possible_ortholog 1 retrogene
retro_itri_1892,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_519 58.75 63.11
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Download FASTA sequences of all ENSFCAG00000004243 retrocopies