RetrogeneDB ID: retro_mputfur_125

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897076.1:2212559..2213078(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018502
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000005449
• Aliases: None
• Description: Mitochondrial ribosomal protein L17 [Source:UniProtKB/TrEMBL;Acc:G9KBA6]

Sequence

>retro_mputfur_125
ATGCGGCTGTCAGTTGCAGCCGCCATCTCCCATGGCCGCGTATTCCGCCGTCTGGGCCTTGGTCCGGAGTCCCGCATCCA
CCTGTTGAGGAACTTGCTTACAGGCTTGGTGCGACACGAAAGCATCGAGGCGTCATGGGCGCGCGTGGACGAAATGAGGG
GCTACGCCGAGAAGCTCATCGACTATGGGAAGCTGGGAGACACTAACGAACAAGCCATGCGCATGGCCGACTTCTGGCTT
ACGGAGAAAGACTTGATCCCAAAGCTGTTTCAAGTACTGGCCCCTCGTTACCAAGGTCAAAATGGGGGCTACACGAGAAT
GCTGCAGATCCCAAATAGCAGTGAGCAGGATCGGGCCAAGATGGCAGTGATCGAGTATAAGGGGAACTGCCTCCCACCCC
TACCGGTGCCTCGCAGAGACAGCAACCTTACACTTCTAAACCAGCTGCTTCAAGGGTTGCAGCAAGACCAGAAAGCAAGC
ATCCACGGCTCCCACACAGCTCAAACGCCAGGGATTTAA

Alignment

ORF - retro_mputfur_125 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.42 %
• Parental protein coverage: 80.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRLSVAAAISHGRVFRRLGLGPESRIHLLRNLLTGLVRHERIEASWARVDEMRGYAEKLIDYGKLGDTNE
          MRLSVAAAISHGRVFRRLGLGPESRIHLLRNLLTGLVRHE.IEASWARVDEMRGYAEKLIDYGKLGDTNE
Retrocopy MRLSVAAAISHGRVFRRLGLGPESRIHLLRNLLTGLVRHESIEASWARVDEMRGYAEKLIDYGKLGDTNE

Parental  QAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIPNSSEQDRAKMAVIEYKGNCLPPLPVPRRD
          QAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIPNSSEQDRAKMAVIEYKGNCLPPLPVPRRD
Retrocopy QAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIPNSSEQDRAKMAVIEYKGNCLPPLPVPRRD

Parental  SNLTLLNQLLQGLQQDQKASIHGSHTAQTPGI
          SNLTLLNQLLQGLQQDQKASIHGSHTAQTPGI
Retrocopy SNLTLLNQLLQGLQQDQKASIHGSHTAQTPGI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_125 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_125 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000027536	1 retrocopy	retro_cpor_1430,
Macropus eugenii	ENSMEUG00000013588	1 retrocopy	retro_meug_1822,
Myotis lucifugus	ENSMLUG00000001144	2 retrocopies	retro_mluc_2368, retro_mluc_679,
Mustela putorius furo	ENSMPUG00000005449	1 retrocopy	retro_mputfur_125 ,
Rattus norvegicus	ENSRNOG00000019497	1 retrocopy	retro_rnor_1979,
Sus scrofa	ENSSSCG00000024693	1 retrocopy	retro_sscr_217,
Ictidomys tridecemlineatus	ENSSTOG00000003313	3 retrocopies	retro_itri_1019, retro_itri_1156, retro_itri_240,