RetrogeneDB ID: retro_mputfur_1175

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897034.1:2058551..2059052(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NT5C3A
• Ensembl ID: ENSMPUG00000005546
• Aliases: None
• Description: 5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820]

Sequence

>retro_mputfur_1175
TTAAATCACATGATGGCAGAATCTGATGTTATGCTCAAGGAAGAGTATGAGAATTTCTTTGATAAACTCCAGCGATACAG
TATTTCTGTGTTCATATTTTTAGCTGGTATTGGTGTTATGCTGGAGGAGGTAGTCCATCAGGCTAGCGTTTATCACCCAA
ACATCACAGTAGTGTTCGGCTTCATGGATTTTGATGGTAATGGGGGTGCTCAAAGGATTTAAAAGCAAACTAATTTCTTT
ATTTAACAAACATGATGGTGCCTCGAAGAATACAGAATATTTCAATTGATGAAAAGAAAATAGCAACTAACTCTGCTGGG
AGATTCTCAAGGGGATATAAGAATGGCAGATGAAGTAGCTAATGTTGAACACATTCTGAAAATTGGATATCTAAATGATA
GGGTGGAAGAGCTTTTTAAAAAGTACATGGACTCTAATGACATTGTTTTAGTAAAAGATGAATCTTTGGATGTAGCCAAC
TCTGTCTTACAGAAGATTCTA

Alignment

ORF - retro_mputfur_1175 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.88 %
• Parental protein coverage: 56.23 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LKEIVAESDVMLKEGYENFFDKLQEYGIPVFIFSAGIGDILEEVIHQAGVYHPNITVVSNFMDFDDN-GV
          L....AESDVMLKE.YENFFDKLQ.Y.I.VFIF.AGIG..LEEV.HQA.VYHPNITVV..FMDFD.N.GV
Retrocopy LNHMMAESDVMLKEEYENFFDKLQRYSISVFIFLAGIGVMLEEVVHQASVYHPNITVVFGFMDFDGN>GV

Parental  LKGFKGELIHVFNKHDGALKNTEYFNRLKDNSN-IILLGDSQGDIRMADGVANVEHILKIGYLNDRVDEL
          LKGFK..LI..FNKHDGA.KNTEYFN..K.NSN...LLGDSQGDIRMAD.VANVEHILKIGYLNDRV.EL
Retrocopy LKGFKSKLISLFNKHDGASKNTEYFN**KENSN<LTLLGDSQGDIRMADEVANVEHILKIGYLNDRVEEL

Parental  LEKYMDSYDIVLVKDESLDVANSILQKIL
          ..KYMDS.DIVLVKDESLDVANS.LQKIL
Retrocopy FKKYMDSNDIVLVKDESLDVANSVLQKIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1175 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1175 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006624	1 retrocopy	retro_amel_875,
Bos taurus	ENSBTAG00000016709	1 retrocopy	retro_btau_1465,
Canis familiaris	ENSCAFG00000003154	1 retrocopy	retro_cfam_1295,
Equus caballus	ENSECAG00000011777	1 retrocopy	retro_ecab_1118,
Homo sapiens	ENSG00000122643	1 retrocopy	retro_hsap_3084,
Gorilla gorilla	ENSGGOG00000028164	1 retrocopy	retro_ggor_2119,
Mustela putorius furo	ENSMPUG00000005546	2 retrocopies	retro_mputfur_1175 , retro_mputfur_577,
Mustela putorius furo	ENSMPUG00000010759	2 retrocopies	retro_mputfur_1354, retro_mputfur_1594,
Pteropus vampyrus	ENSPVAG00000013182	2 retrocopies	retro_pvam_148, retro_pvam_706,
Rattus norvegicus	ENSRNOG00000005981	1 retrocopy	retro_rnor_632,
Sus scrofa	ENSSSCG00000022912	1 retrocopy	retro_sscr_540,
Ictidomys tridecemlineatus	ENSSTOG00000026363	2 retrocopies	retro_itri_1325, retro_itri_682,