RetrogeneDB ID: retro_mmur_95

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1229:7945..9161(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DDX21
• Ensembl ID: ENSMICG00000015112
• Aliases: None
• Description: DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:HGNC Symbol;Acc:2744]

Sequence

>retro_mmur_95
TCTGAAGACAATCCCCAAACATTGCTTTTTTCTGCAACTTGCCCTCAGTGGGTATTTAATGTTGCTAAGAAATACATGAA
ATCTACATATGAACAGGTGGACCTGATTGGTAAAAAGACACAGAAAACGGCAATAACTGTGGAGCATCCGGCTATCAAGT
GCCACTGGAGTCAGAGGGCAGCAGTGATTGGGGATGTGATCCGAGTGTATAGTGGTCATCAAGGACGCGCTATTGTCTTC
TGCGAAACCAAGAAGGAAGCTCAGGAGCTGTCACAGAATTCGGCTATAACGCAGAATGGGCTGTCATTACATGGAGACAT
TCCACAGAGGCAAAGGGAAATCACCCTGAAAGGTTTCAGAAATGTTGCTTTTGGAGTTTTGGTGGCAACCGATGTTGCTG
CGCGTGGCTTAGACATCCCTGAAGTTGATTTGGTTGTACAAAGCTGTCCACCAAAGGATGTAGAGTCCTACATTCATTGT
TCTGGGCGGACAGGTAGAGCTGGAAGGACAGGGGTTTGCATCTGCTTTTATCAGCACAAGGAAGAATATCAATTAGTACA
AGTGGAACAAAAAGCGGGAACTAAGTTTAAACGAATAGGTGTCCCTTCTGCAACAGAAATAATAAAAACTTCCAGCAGGT
TTTTGGATTCTGTGCTTCCCACTGCCATTGGTCACTTCAAGGAATCAGCCCAGAAGCTGATAGAGGAGAAGGGAGCTGTG
GAAGCCCTGGCAGCAGCATCGGCTCATATTTCAGGTGCCACATCCGTAGACCAGCGCTCCTTGATCAACTCAGCTGCGGG
TTTTGTGACCATGATCTTGCGGTGCTCAATTGAAATGCCAAACATTAGTTATGCTTGGAAAGAACTTAAAGAGCAACTGG
GCGAGGATGTTGGTTCCAAAGTGAAGGGAATGGTCTTTCTCAAAGGAAAGCTGGGTGTTTGCTTTGATGTACCCACTGCA
TCAGTAACAGAAATGCAGGAGAAATGGCATGATTTGCGACGCTCGCAGCTCTCTGTGGCCACGGAGCAACCAGAGCTGGA
AGGACCACGGCAAGGATATGGAGCCTTCAGGCGACAGCGAGAAGGAACGCAGAAACTTCAGGGGACACCGGGACGGCAGT
CGAGGCTTCAGGGGACAGTGGTCAGGCGGTGACAACAAAAGTAACAGATCCCAAAACAAAGGCCAAAAGCGGAGTTTTAG
TAAAGCATTTGGTAAA

Alignment

ORF - retro_mmur_95 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.32 %
• Parental protein coverage: 52.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SEDNPQTLLFSATCPQWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVIGDVIRVY
          SEDNPQTLLFSATCPQWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEH.AIKCHWSQRAAVIGDVIRVY
Retrocopy SEDNPQTLLFSATCPQWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHPAIKCHWSQRAAVIGDVIRVY

Parental  SGHQGRTIVFCETKKEAQELSQNSAITQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIP
          SGHQGR.IVFCETKKEAQELSQNSAITQ...SLHGDIPQ.QREITLKGFRN.AFGVLVAT.VAARGLDIP
Retrocopy SGHQGRAIVFCETKKEAQELSQNSAITQNGLSLHGDIPQRQREITLKGFRNVAFGVLVATDVAARGLDIP

Parental  EVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKA
          EVDLVVQSCPPKDVESYIH.SGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAG.KFKRIGVPSATEIIK.
Retrocopy EVDLVVQSCPPKDVESYIHCSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGTKFKRIGVPSATEIIKT

Parental  SSKDAIRLLDSVPPTAIGHFKESAQKLIEEKGAVEALAAALAHISGATSVDQRSLINSAAGFVTMILRCS
          SS......LDSV.PTAIGHFKESAQKLIEEKGAVEALAAA.AHISGATSVDQRSLINSAAGFVTMILRCS
Retrocopy SSR----FLDSVLPTAIGHFKESAQKLIEEKGAVEALAAASAHISGATSVDQRSLINSAAGFVTMILRCS

Parental  IEMPNISYAWKELKEQLGEDVDSKVKGMVFLKGKLGVCFDVPTASVTEMQEKWHDSRRWQLSVATEQPEL
          IEMPNISYAWKELKEQLGEDV.SKVKGMVFLKGKLGVCFDVPTASVTEMQEKWHD.RR.QLSVATEQPEL
Retrocopy IEMPNISYAWKELKEQLGEDVGSKVKGMVFLKGKLGVCFDVPTASVTEMQEKWHDLRRSQLSVATEQPEL

Parental  EGPREGYGAFRGQREG-NRGFRRQREGSRNFRGQRDGSRGFRGQRSGGGNKSNRSQNKGQ
          EGPR.GYGAFR.QREG..R.FR..R.GSR.FRGQ..G...........G.K...S...G.
Retrocopy EGPRQGYGAFRRQREG>RRNFRGHRDGSRGFRGQWSGGDNKSNRSQNKGQKRSFSKAFGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_95 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_95 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013791	2 retrocopies	retro_cfam_1024, retro_cfam_1925,
Callithrix jacchus	ENSCJAG00000012876	1 retrocopy	retro_cjac_1912,
Macropus eugenii	ENSMEUG00000010586	1 retrocopy	retro_meug_1383,
Microcebus murinus	ENSMICG00000015112	1 retrocopy	retro_mmur_95 ,
Microcebus murinus	ENSMICG00000017145	1 retrocopy	retro_mmur_1603,
Mus musculus	ENSMUSG00000020075	2 retrocopies	retro_mmus_582, retro_mmus_662,
Procavia capensis	ENSPCAG00000016697	1 retrocopy	retro_pcap_346,
Pongo abelii	ENSPPYG00000002389	1 retrocopy	retro_pabe_3816,
Tupaia belangeri	ENSTBEG00000002310	2 retrocopies	retro_tbel_1590, retro_tbel_4454,