RetrogeneDB ID: retro_mluc_793

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:8944452..8947299(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009092
• Aliases: None
• Description: None

Sequence

>retro_mluc_793
GCGGGTGCCACGGCCGCCATCATGTCAGACACGGACAGAGATGAAGATTCCACTGGGGGCTGCCCATTTTCTTTAACTGG
ATTCCTTTTCGGCAACATCAACGGAGCCTTGCAGCTGGAGGGGGAAAGCGTCTTGGACGATGAGTGTAAGAAGCACCTGG
CAGGCTTGGGGGCTTTGGGTCTGGGCAGCCTGATCGCTGAACTCACGGCGAATGAAGACTTGGCTGGGAATGACGGTGCT
CTGGTGAATGATGAAGGATGGATCAGGAGCACAGAAGATGCTGTGGACTATTCAGACATCAGTGAGGTGGCAGAAGATGA
AAGTCGCAGACACCAGCACACAATGGGGAGCTTGCAGCCCCTTTGCCACTCAGGATGTGATGACGAGGACTATGAGGCTG
ATTGTGAAGACATTGCTTGCAAGTTGATGCCTCCTCCACCTCCACCCCCAGGACCATTAAAGGAGGATAAGGACCAGGAG
GCTATTACTGGTGTGTCTGAAGATGGAGGAGGCATCATCATGCCCTCCATCCTTGCCCCTTCCTCTTTGGCCTCAGGAAA
AGTGGACTTCAGTAGTTCCTCTGACTCAGAATATGAGATGGGACCTCAGGAAGCAACACAGGCAGAATCCGAGGATGGAA
AGCTGACCCTCCCGTTGGCTGGGGCTATGCAGCATGATGCTACCAAGCTGTTGCTGAGTGCCACAGATCAGTTCCCAGAA
TGTTGGCCTGGAAAGGTGTTACGCTTCCCACGTCTTGTTGGACCAGGAAAGAATGTCCCGTCTGTTTGGCGGAGTGCTCA
GAGAAAGAGGAAAAGGAAGCACCGTGAGCTGATACAGGAAGAGCAGATTCAGGAGGTGGAGTGCTCAGTGGAATCGCAAG
TCAACCAGAAGACTTTATGGACCTACGACTATGCTCCGCCACCACCTCCAGAGCAGTGTCTCCCTGATGATGAAATCACA
ACGATGGCTCATGTGGAGTCCATGTTCTCCCAGCCTACTGGAGTTATAGATAAAGTGACAGATACCAAAGCCAGAGTAGC
TGAGTGGCGTTATGGGCCTTCCCGACTGTGGTATGATATGCTGGGTGTCCCTGAAGATGGCAGTGGGTTTGACTATGGCT
TCAAACTGAGAAAGATGGAACATGAACCTGTGATGAAAGGTAGAATGATGGAGGACTTTAGGAAAGTTGAGGACAGCAGT
GGCACTGATCTTCTGGCTGATGAAAACTTCCTGATGGCGACACAACTGCATTGGGAGGATGATATCATCTGGGATGGGGA
GGATGTCAAACACAAAGGGACAAGACCTCAGCGTGCAAGCCTGGCAGGCTGGATTCCTCTCAGCACGACTCGAAAGGCCA
TGGCTTACAATGTTGAGCAAGGTTGTGCAGCCAGCCTGGATGATGACAAGCCTTGGGACTCCATTTTCCCCATTGACAAT
GAGGAGCTGGTGTATGGACGTTGGGAGGACAACATTATTTGGGATGCTCAGGCCATGCCCCGGATGTTGGAGCCTCCTGT
TTTGACACTTGATCCCAATGATGAGAATCTCATTTTGGAAATTCCTGATGAGGAGGAAGAGGCCACATCTAACTCCCCCT
CCAAGGAGAGTAAAAAGGAATCATCTCTAAAGAAGAGTCAAATTCTCTTAGGGAAAACAGGAGTCACCAAGGAGGAACCA
CAGCAGAACCGGTCTCAGCCAGAAGTGAAAGATCCATGGAATCTCTCCAATGATGAGTATTACTACCCCAGGCAACAGCG
TCTTCAAGGCACTTTTGGAGGAAATGGTATCCAGCACTCAATTCCTGCTGTGGAATTACGGCAGCCCTTCTTTCCCACCC
ATATGGGGCCCATCAAACTCCGGCAATTCCATCGCCCAGCTCTGAAGAAGTACTCCGTTGGGGCATTGTCTCAGCCAGGT
CCCCACTCAGTCCAACCCTTGCTAAAGCACATAAGAGAGAAGGCTAAGAGGAGAGAACAAGAGAGGCAAGCTTCAGGTGG
TGGAGAGATGTTTTTTATGCGCACACCTCAGGACCTCACAGGCAGAGATGGAGATCTTATTCTAGCAGAATACAGTGAGG
AAAATGGACCGTTAATGATGCAGGTTGGCATGGCAACCAAGATAAGAAACTATTATAAGCGGAAACCTGGAAAAGATCCC
GGGGCCCCAGATTGTAAATATGGAGACACTGTTTACTGCCATACCTCTCCTTTCCTGGGCTCTCTCCATCCTGGCCAGTT
GCTGCAGGCGTTTGAGAACAATCTCTTTCGTGCCCCAATTTATCTTCACAAGATGCCAGAAACTGATTTCCTTATCATTC
GGACAAGGCAAGGTTACTACATTCGGGAATTGGTGGATATCTTTGTGGTTGGCCAGCAGTGCCCCTTGTTTGAAGTTTCT
GGGCCCAACTCCAAAAGGGCCAAAACACATATTCGAGACTTTCTCCAGGTTTTTATTTACCGCCTCTTCTGGAAGAGTGC
AGATCGGCCACAGCGGATCCGAATGGAAGATATAACAACAGCCTTTCCCTCTCACTCAGAAAGCAGCCTCCGGAAGAGGC
TAAAGCTCTGTGCTGACTTCAAACGCACAGGGACGGACTCAGGTTGGTGGGTGCTGAAGCCTGATTTTCGTTTACCAACT
GAAGAGGAGATCAGAGCTATGGTGTCTCCAGAGCAGTGCTGTGCTTATTACAGTATGAGAGCTGCAGAGCAGCGACTCAA
GGATGCTGGCTATGGCGAGAAGTCCTGTTTTGCTCCAGAAGAAGAAAACGAGGAAGATTTCCAGATGAAGACTGATGATG
AGGTTCACACCGCTCCTTGGAACACCACAAGGGCCTTCATTGCTGCC

Alignment

ORF - retro_mluc_793 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.52 %
• Parental protein coverage: 50.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AGATAAIMSDTDSDEDSTGGCPFSLTGFLFGNINGAGQLEGESVLDDECKKHLAGLGALGLGSLITELTA
          AGATAAIMSDTD.DEDSTGGCPFSLTGFLFGNINGA.QLEGESVLDDECKKHLAGLGALGLGSLI.ELTA
Retrocopy AGATAAIMSDTDRDEDSTGGCPFSLTGFLFGNINGALQLEGESVLDDECKKHLAGLGALGLGSLIAELTA

Parental  NEELTGNDGALVNDEGWIRSTEDAVDYSDISEVAEDESRRYQQTMGSLQPLCHSEYDDDDYDADCEDIDC
          NE.L.GNDGALVNDEGWIRSTEDAVDYSDISEVAEDESRR.Q.TMGSLQPLCHS..DD.DY.ADCEDI.C
Retrocopy NEDLAGNDGALVNDEGWIRSTEDAVDYSDISEVAEDESRRHQHTMGSLQPLCHSGCDDEDYEADCEDIAC

Parental  KLMPPPPPPPGPLKKDKDQDAITGVSEDGEGIILPSIIAPSSLASEKVDFSSSSDSESEMGPQEATQAES
          KLMPPPPPPPGPLK.DKDQ.AITGVSEDG.GII.PSI.APSSLAS.KVDFSSSSDSE.EMGPQEATQAES
Retrocopy KLMPPPPPPPGPLKEDKDQEAITGVSEDGGGIIMPSILAPSSLASGKVDFSSSSDSEYEMGPQEATQAES

Parental  EDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQE
          EDGKLTLPLAG.MQHDATKLL.S.T..FPE..PGKVLRF.RL.GPGKNVPSVWRSA.RKRK.KHRELIQE
Retrocopy EDGKLTLPLAGAMQHDATKLLLSATDQFPECWPGKVLRFPRLVGPGKNVPSVWRSAQRKRKRKHRELIQE

Parental  EQIQEVECSVESEVNQKSLWIYDYAPPPPPEQCLSDDEITMMAPVESKFSQSTGDIDKVTDTKPRVAEWR
          EQIQEVECSVES.VNQK.LW.YDYAPPPPPEQCL.DDEIT.MA.VES.FSQ.TG.IDKVTDTK.RVAEWR
Retrocopy EQIQEVECSVESQVNQKTLWTYDYAPPPPPEQCLPDDEITTMAHVESMFSQPTGVIDKVTDTKARVAEWR

Parental  YGPARLWYDMLGVPEDGSGFDYGFKLRKMEHEPVIKGRMIEDFRKFEESSGTDLLADENFLMVTQLHWED
          YGP.RLWYDMLGVPEDGSGFDYGFKLRKMEHEPV.KGRM.EDFRK.E.SSGTDLLADENFLM.TQLHWED
Retrocopy YGPSRLWYDMLGVPEDGSGFDYGFKLRKMEHEPVMKGRMMEDFRKVEDSSGTDLLADENFLMATQLHWED

Parental  DIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSIFPIDNEELVYGRWED
          DIIWDGEDVKHKGT.PQRASLAGW.P.S.TR.AMAYNV.QG.AA.LDDDKPW.SIFPIDNEELVYGRWED
Retrocopy DIIWDGEDVKHKGTRPQRASLAGWIPLSTTRKAMAYNVEQGCAASLDDDKPWDSIFPIDNEELVYGRWED

Parental  NIIWDAQAMPWLLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRILLGKTGVIKEEP
          NIIWDAQAMP..LEPPVLTLDPNDENLILEIPDE.EEATSNSPSKESKKESSLKKS.ILLGKTGV.KEEP
Retrocopy NIIWDAQAMPRMLEPPVLTLDPNDENLILEIPDEEEEATSNSPSKESKKESSLKKSQILLGKTGVTKEEP

Parental  QQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPVLKK
          QQN.SQPEVKDPWNLSNDEYYYP.QQ.L.GTFGGN.IQHSIPAVELRQPFFPTHMGPIKLRQFHRP.LKK
Retrocopy QQNRSQPEVKDPWNLSNDEYYYPRQQRLQGTFGGNGIQHSIPAVELRQPFFPTHMGPIKLRQFHRPALKK

Parental  YSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTSQDLTGKDGDLILAEYSEENGPLMM
          YS.GALSQPGPHSVQPLLKHI..KAK.REQERQASGGGEMFFMRT.QDLTG.DGDLILAEYSEENGPLMM
Retrocopy YSVGALSQPGPHSVQPLLKHIREKAKRREQERQASGGGEMFFMRTPQDLTGRDGDLILAEYSEENGPLMM

Parental  QVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDF
          QVGMATKI.NYYKRKPGKDPGAPDCKYG.TVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDF
Retrocopy QVGMATKIRNYYKRKPGKDPGAPDCKYGDTVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDF

Parental  LIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSADRPRRIRMEDIKK
          LIIRTRQGYYIRELVDIFVVGQQCPLFEV.GPNSKRA.THIRDFLQVFIYRLFWKSADRP.RIRMEDI..
Retrocopy LIIRTRQGYYIRELVDIFVVGQQCPLFEVSGPNSKRAKTHIRDFLQVFIYRLFWKSADRPQRIRMEDITT

Parental  AFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAG
          AFPSHSESS.RKRLKLCADFKRTG.DS.WWVLK.DFRLPTEEEIRAMVSPEQCCAYYSM.AAEQRLKDAG
Retrocopy AFPSHSESSLRKRLKLCADFKRTGTDSGWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMRAAEQRLKDAG

Parental  YGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTQGPFIAA
          YGEKS.FAPEEENEEDFQMK.DDEV.TAPWNT...FIAA
Retrocopy YGEKSCFAPEEENEEDFQMKTDDEVHTAPWNTTRAFIAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_793 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147133	1 retrocopy	retro_hsap_66,
Myotis lucifugus	ENSMLUG00000009092	1 retrocopy	retro_mluc_793 ,
Macaca mulatta	ENSMMUG00000005663	1 retrocopy	retro_mmul_1149,
Pongo abelii	ENSPPYG00000020453	1 retrocopy	retro_pabe_161,
Sarcophilus harrisii	ENSSHAG00000005804	1 retrocopy	retro_shar_291,