RetrogeneDB ID:

retro_hsap_66

Retrocopy
location
Organism:Human (Homo sapiens)
Coordinates:9:32630096..32635577(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSG00000122728
Aliases:TAF1L, TAF2A2
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:TAF1
Ensembl ID:ENSG00000147133
Aliases:TAF1, BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, N-TAF1, NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDP
Description:TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa [Source:HGNC Symbol;Acc:11535]


Retrocopy-Parental alignment summary:






>retro_hsap_66
ATGCGACCCGGCTGCGATTTGCTGCTGAGGGCAGCAGCTACCGTCACTGCCGCCATCATGTCAGACTCGGACAGCGAGGA
AGATTCATCTGGAGGTGGCCCATTTACTTTAGCGGGTATCCTTTTCGGCAACATCAGTGGAGCGGGGCAGCTGGAGGGGG
AAAGCGTCTTGGATGATGAGTGTAAGAAGCACTTGGCAGGCTTGGGGGCTTTGGGGCTGGGCAGCCTAATCACTGAACTC
ACGGCAAATGAAGAATTGACTGGGACTGGCGGTGCCTTGGTAAATGATGAAGGGTGGATTAGGAGTACAGAAGATGCTGT
AGACTATTCAGACATCAATGAGGTGGCAGAAGATGAAAGCCAAAGACACCAGCAGACGATGGGGAGCTTGCAGCCCCTTT
ACCACTCGGATTATGATGAAGATGACTATGATGCTGATTGTGAAGACATTGATTGCAAGTTGATGCCTCCTCCACCTCCA
CCCCCGGGACCAATGAAGAAGGATAAGGACCAAGATGCTATTACCTGTGTGTCTGAAAGTGGAGAAGACATCATCTTGCC
CTCCATCATTGCCCCTTCCTTTTTGGCCTCAGAGAAAGTGGATTTCAGTAGTTACTCTGATTCAGAATCTGAGATGGGAC
CTCAGGAAGCAACACAGGCAGAATCTGAGGATGGAAAGCTGACCCTTCCATTGGCTGGGATTATGCAGCATGATGCCACC
AAGCTGTTGCCAAGTGTCACCGAACTTTTTCCAGAATTTCGACCTGGAAAAGTGTTACGCTTCCTACATCTTTTTGGACC
AGGGAAGAATGTCCCATCTGTTTGGCGGAGTGCTCGGAGAAAGAGGAAGAAGCATCGTGAGCTGATACAGGAAGAGCAGA
TCCAGGAGGTGGAATGCTCAGTAGAATCAGAAGTCAGCCAGAAGTCTTTGTGGAACTATGACTATGCTCCACCACCACCC
CCAGAGCAGTGTCTCGCTGATGATGAAATCACGATGATGGTTCCTGTGGAGTCCAAATTTTCCCAATCAACTGGAGATGT
AGATAAAGTGACAGATACCAAACCAAGAGTGGCTGAGTGGCGTTATGGGCCTGCCCGACTGTGGTATGATATGCTGGGTG
TCTCCGAAGATGGCAGTGGGTTTGACTATGGCTTCAAACTGAGAAAGACACAACATGAACCTGTGATAAAATCTAGAATG
ATGGAGGAATTTAGGAAACTTGAGGAAAGCAATGGCACTGATCTTCTGGCTGACGAAAACTTCCTGATGGTGACACAGCT
GCATTGGGAGGATTCTATCATCTGGGATGGGGAGGATATCAAACACAAAGGGACAAAACCTCAGGGTGCAAGCCTGGCAG
GCTGGCTTCCTTCTATTAAGACTAGGAATGTAATGGCTTACAATGTTCAGCAAGGTTTTGCACCCACTCTGGATGATGAC
AAACCTTGGTACTCCATTTTTCCCATTGACAATGAGGATCTGGTGTATGGACGCTGGGAGGACAATATCATTTGGGATGC
TCAGGCCATGCCCCGGCTGTTGGAACCTCCTGTTTTGGCACTTGATCCCAATGATGAGAACCTCATTTTGGAAATTCCTG
ATGAGAAGGAAGAGGCCACCTCTAACTCCCCCTCCAAGGAGAGTAAGAAGGAATCATCTCTGAAGAAGAGTCGAATTCTC
TTGGGCAAAACAGGTGTCATCAGGGAGGAACCACAGCAGAACATGTCTCAGCCAGAAGTGAAAGATCCATGGAATCTCTC
CAATGATGAGTATTATTTCCCCAAGCAACAGGGTCTTCGGGGCACCTTTGGAGGGAATATTATCCAGCATTCAATTCCTG
CTATGGAATTATGGCAGCCCTTCTTTCCCACCCACATGGGGCCCATCAAAATCCGGCAGTTCCATCGCCCACCTCTGAAA
AAGTACTCATTTGGTGCACTCTCTCAGCCAGGTCCCCATTCAGTCCAACCTTTGCTAAAGCACATCAAAAAAAAGGCCAA
GATGAGAGAACAAGAGAGGCAAGCCTCAGGTGGTGGAGAGTTGTTTTTTATGCGCACACCTCAGGATCTCACAGGCAAAG
ATGGAGATCTTATTCTTGCAGAATATAGTGAGGAAAATGGACCCTTAATGATGCAGGTTGGCATGGCAACCAAGATAAAG
AACTATTATAAACGGAAACCTGGCAAAGATCCTGGAGCACCAGATTGTAAATATGGGGAAACTGTTTACTGCCATACATC
TCCTTTCTTGGGCTCTCTCCATCCTGGCCAATTACTGCAGGCACTTGAGAACAACCTTTTTCGTGCTCCAGTGTATCTTC
ATAAGATGCCAGAAACTGATTTTCTGATCATTCGGACAAGACAGGGTTACTATATTCGGGAATTAGTGGATATTTTTGTG
GTTGGCCAGCAGTGTCCCTTGTTTGAAGTTCCTGGGCCTAACTCCAGAAGGGCCAATATGCATATTCGAGACTTTCTACA
GGTTTTTATTTACCGCCTTTTCTGGAAGAGTAAAGATCGGCCACGGAGGATACGAATGGAAGATATAAAAAAAGCCTTTC
CTTCCCATTCAGAAAGCAGCATCCGGAAGAGGCTAAAGCTCTGCGCTGACTTCAAACGCACAGGGATGGATTCAAACTGG
TGGGTGCTTAAGTCTGATTTTCGTTTACCAACGGAAGAAGAGATCAGAGCTAAGGTGTCACCAGAGCAGTGCTGTGCTTA
TTATAGCATGATAGCTGCAAAGCAACGACTGAAGGATGCTGGCTATGGTGAGAAATCCTTTTTTGCCCCAGAAGAAGAAA
ATGAGGAAGATTTCCAGATGAAGATTGATGATGAAGTTCACGCTGCTCCTTGGAACACCACAAGGGCCTTCATTGCTGCC
ATGAAGGGCAAGTGTCTCCTAGAGGTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAAGGATTCTCCTATGTGAAGAT
TCCAAATAAACCAACACAGCAGAAGGATGATAAAGAGCCACAGGCAGTGAAGAAGACAGTGACAGGAACAGATGCAGACC
TTCGTCGCCTTTCCCTGAAAAATGCCAAGCAACTTCTACGTAAATTTGGTGTGCCTGAGGAAGAGATTAAAAAGTTGTCC
CGCTGGGAAGTGATTGATGTGGTGCGCACAATGTCAACAGAACAGGCTCATTCTGGAGAGGGGCCCATGAGTAAATTTGC
CCGTGGATCAAGGTTTTCTGTGGCTGAGCATCAAGAGCGTTACAAAGAGGAATGTCAGCGTATCTTTGACCTACAGAACA
AGGTTCTGTCATCAACTGAGGTCTTATCAACTGACACAGACAGCATCTCAGCTGAAGATAGTGACTTTGAAGAAATGGGA
AAGAACATTGAGAACATGTTGCAGAACAAGAAAACCAGCTCTCAGCTGTCACGTGAATGGGAGGAGCAGGAGCGGAAGGA
ACTACGGCGAATGCTACTGGTAGCAGGCTCAGCAGCATCAGGAAACAATCACAGAGATGATGTCACAGCTTCCATGACTA
GCCTTAAGTCTTCTGCCACTGGACACTGTCTCAAGATTTATCGCACATTTCGAGATGAAGAGGGGAAAGAGTATGTTCGC
TGTGAGACAGTCCGAAAACCAGCTGTCATTGATGCCTATGTGCGCATACGGACTACAAAAGATGAGAAATTCATTCAAAA
ATTTGCCCTTTTTGATGAAAAACATCGGGAAGAGATGCGGAAAGAACGGCGGAGGATTCAAGAGCAACTGAGGCGGCTTA
AGCGGAACCAGGAAAAGGAGAAGCTTAAGGGTCCTCCTGAGAAGAAGCCCAAGAAAATGAAAGAGCGTCCTGACCTAAAA
CTGAAATGTGGGGCATGTGGTGCCATTGGACATATGAGGACTAACAAATTCTGCCCCCTCTATTATCAAACAAATGTGCC
ACCTTCGAAACCTGTTGCCATGACAGAAGAGCAGGAGGAGGAGTTGGAAAAGACAGTCATTCATAATGATAATGAAGAAC
TTATCAAGGTTGAAGGGACCAAAATTGTCTTCGGGAAACAGCTAATTGAGAATGTGCATGAGGTTCGCAGAAAATCTCTG
GTTCTCAAGTTTCCTAAACAGCAGCTTCCTCCAAAGAAGAAACGGCGAGTTGGAACCACTGTTCATTGTGACTATTTGAA
TATACCTCATAAGTCCATCCACCGACGCCGCACAGACCCTATGGTGACGCTGTCATCCATCCTGGAGTCTATCATCAATG
ACATGAGAGATCTTCCAAATACACACCCTTTCCACACTCCAGTCAATGCAAAGGTTGTAAAGGACTACTACAAAATCATC
ACTCGGCCAATGGACCTACAAACACTCCGTGAAAATGTGCGTAAATGCCTCTACCCATCTCGGGAAGAGTTCAGAGAGCA
TCTGGAGCTAATTGTGAAAAACAGTGCGACCTACAATGGGCCAAAACATTCATTGACTCAGATCTCTCAATCCATGCTGG
ATCTCTGTGATGAAAAACTTAAAGAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCCTTGCTGGATGAT
GATGACCAAGTGGCATTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCAGTTCCAGATTCTTGGCCATT
TCATCACCCAGTTAATAAGAAGTTTGTTCCAGATTATTACAAAATGATTGTCAATCCAGTGGATTTAGAGACCATACGTA
AGAACATCTCCAAGCACAAGTATCAGAGTCGGGAGAGTTTTCTAGATGATGTAAACCTTATTCTTGCCAACAGTGTTAAG
TATAATGGACCTGAGAGTCAGTACACTAAGACTGCTCAGGAGATTGTGAACATCTGTTACCAGACAATTACTGAGTATGA
TGAGCATTTGACTCAACTTGAGAAGGATATTTGTACAGCTAAAGAAGCAGCTTTGGAGGAAGCAGAATTAGAAAGCCTGG
ACCCAATGACCCCAGGGCCCTACACATCTCAGCCTCCTGATATGTATGATACCAACACATCCCTCAGTACGTCTCGAGAT
GCCTCTGTATTTCAAGATGAGAGCAATTTGTCTGTCTTGGATATTTCCACTGCCACTCCAGAAAAACAGATGTGCCAGGG
CCAAGGTAGGCTGGGTGAGGAAGACTCTGATGTGGATGTTGAAGGGTATGATGATGAGGAGGAGGATGGGAAACCTAAGC
CTCCAGCCCCAGAAGGGGGAGATGGTGATCTTGCAGATGAAGAGGAAGGAACTGTACAACAACCTGAAGCCAGTGTCCTG
TATGAGGATTTGCTTATATCTGAAGGAGAAGATGATGAGGAAGATGCTGGGAGTGACGAAGAAGGAGACAATCCTTTCTC
TGCTATCCAGCTGAGTGAAAGTGGAAGTGACTCTGATGTGGGATATGGTGGAATAAGACCCAAACAACCCTTCATGCTTC
AGCATGCTTCAGGAGAACACAAGGATGGGCACGGAAAATGA

ORF - retro_hsap_66 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.37 %
Parental protein coverage: 91.02 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGPGCDLLLRTAATITAAAIMSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDDECKKHLAGLG
M.PGCDLLLR.AAT.TAA.IMSD.DS.EDS.GGGPF.LAG.LFGNI.GAGQLEGESVLDDECKKHLAGLG
RetrocopyMRPGCDLLLRAAATVTAA-IMSDSDSEEDSSGGGPFTLAGILFGNISGAGQLEGESVLDDECKKHLAGLG
ParentalALGLGSLITELTANEELTGTDGALVNDEGWVRSTEDAVDYSDINEVAEDESRRYQQTMGSLQPLCHSDYD
ALGLGSLITELTANEELTGT.GALVNDEGW.RSTEDAVDYSDINEVAEDES.R.QQTMGSLQPL.HSDYD
RetrocopyALGLGSLITELTANEELTGTGGALVNDEGWIRSTEDAVDYSDINEVAEDESQRHQQTMGSLQPLYHSDYD
ParentalEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDSITGVSENGEGIILPSIIAPSSLASEKVDFSSSSDSE
EDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQD.IT.VSE.GE.IILPSIIAPS.LASEKVDFSS.SDSE
RetrocopyEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAITCVSESGEDIILPSIIAPSFLASEKVDFSSYSDSE
ParentalSEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRSAR
SEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFL.LFGPGKNVPSVWRSAR
RetrocopySEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLHLFGPGKNVPSVWRSAR
ParentalRKRKKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLSDDEITMMAPVESKFSQSTGDID
RKRKK.HRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCL.DDEITMM.PVESKFSQSTGD.D
RetrocopyRKRKK-HRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLADDEITMMVPVESKFSQSTGDVD
ParentalKVTDTKPRVAEWRYGPARLWYDMLGVPEDGSGFDYGFKLRKTEHEPVIKSRMIEEFRKLEENNGTDLLAD
KVTDTKPRVAEWRYGPARLWYDMLGV.EDGSGFDYGFKLRKT.HEPVIKSRM.EEFRKLEE.NGTDLLAD
RetrocopyKVTDTKPRVAEWRYGPARLWYDMLGVSEDGSGFDYGFKLRKTQHEPVIKSRMMEEFRKLEESNGTDLLAD
ParentalENFLMVTQLHWEDDIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPWYSIFP
ENFLMVTQLHWED.IIWDGED.KHKGTKPQ.ASLAGWLPS..TRN.MAYNVQQGFA.TLDDDKPWYSIFP
RetrocopyENFLMVTQLHWEDSIIWDGEDIKHKGTKPQGASLAGWLPSIKTRNVMAYNVQQGFAPTLDDDKPWYSIFP
ParentalIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLTLDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSR
IDNEDLVYGRWEDNIIWDAQAMPRLLEPPVL.LDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSR
RetrocopyIDNEDLVYGRWEDNIIWDAQAMPRLLEPPVLALDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSR
ParentalILLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGP
ILLGKTGVI.EEPQQNMSQPEVKDPWNLSNDEYY.PKQQGLRGTFGGNIIQHSIPA.EL.QPFFPTHMGP
RetrocopyILLGKTGVIREEPQQNMSQPEVKDPWNLSNDEYYFPKQQGLRGTFGGNIIQHSIPAMELWQPFFPTHMGP
ParentalIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLI
IK.RQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGE.FFMRTPQDLTGKDGDLI
RetrocopyIKIRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGELFFMRTPQDLTGKDGDLI
ParentalLAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFR
LAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQA.ENNLFR
RetrocopyLAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQALENNLFR
ParentalAPIYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSK
AP.YLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNS.RAN.HIRDFLQVFIYRLFWKSK
RetrocopyAPVYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSRRANMHIRDFLQVFIYRLFWKSK
ParentalDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYY
DRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRA.VSPEQCCAYY
RetrocopyDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYY
ParentalSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGC
SMIAA.QRLKDAGYGEKSFFAPEEENEEDFQMKIDDEV..APWNTTRAFIAAMKGKCLLEVTGVADPTGC
RetrocopySMIAAKQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVHAAPWNTTRAFIAAMKGKCLLEVTGVADPTGC
ParentalGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVV
GEGFSYVKIPNKPTQQKDDKEPQ.VKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVV
RetrocopyGEGFSYVKIPNKPTQQKDDKEPQAVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVV
ParentalRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEE
RTMSTEQA.SGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDS.SAEDSDFEE
RetrocopyRTMSTEQAHSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSISAEDSDFEE
ParentalMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAASGNNHRDDDTASVTSLNSSATGRCLKIYR
MGKNIENMLQNKKTSSQLSRE.EEQERKEL.RMLL.AGSAASGNNHRDD.TAS.TSL.SSATG.CLKIYR
RetrocopyMGKNIENMLQNKKTSSQLSREWEEQERKELRRMLLVAGSAASGNNHRDDVTASMTSLKSSATGHCLKIYR
ParentalTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQE
TFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDE.FI.KFALFDE.HREEMRKERRRIQEQLRRLKRNQE
RetrocopyTFRDEEGKEYVRCETVRKPAVIDAYVRIRTTKDEKFIQKFALFDEKHREEMRKERRRIQEQLRRLKRNQE
ParentalKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIH
KEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTN.PPS.PVAMTEEQEEELEKTVIH
RetrocopyKEKLKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNVPPSKPVAMTEEQEEELEKTVIH
ParentalNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRT
NDNEELIKVEGTKIV.GKQLIE...EVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLN.PHKSIHRRRT
RetrocopyNDNEELIKVEGTKIVFGKQLIENVHEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNIPHKSIHRRRT
ParentalDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHL
DPMVTLSSILESIINDMRDLPNT.PFHTPVNAKVVKDYYKIITRPMDLQTLRENVRK.LYPSREEFREHL
RetrocopyDPMVTLSSILESIINDMRDLPNTHPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHL
ParentalELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKM
ELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKM
RetrocopyELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKM
ParentalMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY
MAVPDSWPFHHPVNKKFVPDYYK.IVNP.DLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY
RetrocopyMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY
ParentalTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLSMS
TKTAQEIVN.CYQT.TEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYT.QPPD.YDTNTSLS.S
RetrocopyTKTAQEIVNICYQTITEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTSQPPDMYDTNTSLSTS
ParentalRDASVFQDESNMSVLDIPSATPEKQVTQ-EGEDGDGDLADEEEG
RDASVFQDESN.SVLDI..ATPEKQ..Q..G..G..D.....EG
RetrocopyRDASVFQDESNLSVLDISTATPEKQMCQGQGRLGEEDSDVDVEG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
bodymap2_adipose 0 .00 RPM 54 .19 RPM
bodymap2_adrenal 0 .00 RPM 53 .30 RPM
bodymap2_brain 0 .12 RPM 35 .07 RPM
bodymap2_breast 0 .00 RPM 43 .50 RPM
bodymap2_colon 0 .00 RPM 47 .04 RPM
bodymap2_heart 0 .00 RPM 24 .83 RPM
bodymap2_kidney 0 .00 RPM 34 .64 RPM
bodymap2_liver 0 .00 RPM 10 .86 RPM
bodymap2_lung 0 .00 RPM 38 .57 RPM
bodymap2_lymph_node 0 .00 RPM 50 .00 RPM
bodymap2_ovary 0 .02 RPM 69 .90 RPM
bodymap2_prostate 0 .00 RPM 61 .19 RPM
bodymap2_skeletal_muscle 0 .00 RPM 24 .59 RPM
bodymap2_testis 5 .07 RPM 44 .25 RPM
bodymap2_thyroid 0 .00 RPM 46 .85 RPM
bodymap2_white_blood_cells 0 .00 RPM 83 .12 RPM

ChIP-Seq - click to see more details

RNA Polymerase II actvity near the 5' end of retro_hsap_66 was not detected

EST - click to see more details

1 EST(s) were mapped to retro_hsap_66 retrocopy
EST ID Start End Identity Match Mis-match Score
DA519710 32633451 32634006 99.1 555 0 553

TSS - click to see more details

No TSS is located nearby retro_hsap_66 retrocopy 5' end.

Lab - click to see more details

retro_hsap_66 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_hsap_66 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pongo abelii retro_pabe_161
Macaca mulatta retro_mmul_1149
Parental genes homology:
Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG00000147133 1 retrocopy
retro_hsap_66 ,
Myotis lucifugus ENSMLUG000000090921 retrocopy
retro_mluc_793,
Macaca mulatta ENSMMUG000000056631 retrocopy
retro_mmul_1149,
Pongo abelii ENSPPYG000000204531 retrocopy
retro_pabe_161,
Sarcophilus harrisii ENSSHAG000000058041 retrocopy
retro_shar_291,

Expression level across human populations :
image/svg+xml GBR_HG00142 GBR_HG00099 GBR_HG00114 GBR_HG00143 GBR_HG00131 GBR_HG00137 GBR_HG00133 GBR_HG00119 GBR_HG00111 GBR_HG00134 FIN_HG00378 FIN_HG00338 FIN_HG00349 FIN_HG00375 FIN_HG00315 FIN_HG00277 FIN_HG00328 FIN_HG00321 FIN_HG00377 FIN_HG00183 TSI_NA20756 TSI_NA20538 TSI_NA20798 TSI_NA20532 TSI_NA20765 TSI_NA20518 TSI_NA20513 TSI_NA20512 TSI_NA20771 TSI_NA20786 YRI_NA19114 YRI_NA19099 YRI_NA18870 YRI_NA18907 YRI_NA19223 YRI_NA19214 YRI_NA18916 YRI_NA19093 YRI_NA19118 YRI_NA19213 Toscaniin Italia: Finnish inFinland: British in England and Scotland: Utah Residents (CEPH) with Northernand Western European Ancestry: Yoruba in Ibadan, Nigeria: CEU_NA12760 CEU_NA12827 CEU_NA12872 CEU_NA12751 CEU_NA12873 CEU_NA12400 CEU_NA11930 CEU_NA12004 CEU_NA11831 CEU_NA11843 No expression ( = 0 RPM ) > 0 RPM = 0.9 RPM Legend:


Library Retrogene expression
CEU_NA11831 0 .04 RPM
CEU_NA11843 0 .00 RPM
CEU_NA11930 0 .07 RPM
CEU_NA12004 0 .00 RPM
CEU_NA12400 0 .00 RPM
CEU_NA12751 0 .05 RPM
CEU_NA12760 0 .00 RPM
CEU_NA12827 0 .09 RPM
CEU_NA12872 0 .90 RPM
CEU_NA12873 0 .03 RPM
FIN_HG00183 0 .05 RPM
FIN_HG00277 0 .00 RPM
FIN_HG00315 0 .06 RPM
FIN_HG00321 0 .06 RPM
FIN_HG00328 0 .02 RPM
FIN_HG00338 0 .02 RPM
FIN_HG00349 0 .03 RPM
FIN_HG00375 0 .00 RPM
FIN_HG00377 0 .00 RPM
FIN_HG00378 0 .00 RPM
GBR_HG00099 0 .00 RPM
GBR_HG00111 0 .04 RPM
GBR_HG00114 0 .00 RPM
GBR_HG00119 0 .00 RPM
GBR_HG00131 0 .00 RPM
GBR_HG00133 0 .00 RPM
GBR_HG00134 0 .02 RPM
GBR_HG00137 0 .03 RPM
GBR_HG00142 0 .06 RPM
GBR_HG00143 0 .00 RPM
TSI_NA20512 0 .00 RPM
TSI_NA20513 0 .02 RPM
TSI_NA20518 0 .00 RPM
TSI_NA20532 0 .07 RPM
TSI_NA20538 0 .05 RPM
TSI_NA20756 0 .00 RPM
TSI_NA20765 0 .02 RPM
TSI_NA20771 0 .00 RPM
TSI_NA20786 0 .00 RPM
TSI_NA20798 0 .00 RPM
YRI_NA18870 0 .00 RPM
YRI_NA18907 0 .00 RPM
YRI_NA18916 0 .00 RPM
YRI_NA19093 0 .03 RPM
YRI_NA19099 0 .11 RPM
YRI_NA19114 0 .05 RPM
YRI_NA19118 0 .00 RPM
YRI_NA19213 0 .00 RPM
YRI_NA19214 0 .00 RPM
YRI_NA19223 0 .02 RPM

Indel association:

No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (PubMed).





Copyright © RetrogeneDB 2014-2017