Parental gene:

TAF1, ENSG00000147133

Aliases:TAF1, BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, N-TAF1, NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDP
Description:TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa [Source:HGNC Symbol;Acc:11535]
Organism:Human (Homo sapiens)
Coordinates:X:70586113..70752224(+)


>ENSG00000147133
ATGGGACCCGGCTGCGATTTGCTGCTGCGGACAGCAGCTACCATCACTGCTGCCGCCATCATGTCAGACACGGACAGCGA
CGAAGATTCCGCTGGAGGCGGCCCATTTTCTTTAGCGGGTTTCCTTTTCGGCAACATCAATGGAGCCGGGCAGCTGGAGG
GGGAAAGCGTCTTGGATGATGAATGTAAGAAGCACTTGGCAGGCTTGGGGGCTTTGGGGCTGGGCAGCCTGATCACTGAA
CTCACGGCAAATGAAGAATTGACCGGGACTGACGGTGCCTTGGTAAATGATGAAGGGTGGGTTAGGAGTACAGAAGATGC
TGTGGACTATTCAGACATCAATGAGGTGGCAGAAGATGAAAGCCGAAGATACCAGCAGACGATGGGGAGCTTGCAGCCCC
TTTGCCACTCAGATTATGATGAAGATGACTATGATGCTGATTGTGAAGACATTGATTGCAAGTTGATGCCTCCTCCACCT
CCACCCCCGGGACCAATGAAGAAGGATAAGGACCAGGATTCTATTACTGGTGTGTCTGAAAATGGAGAAGGCATCATCTT
GCCCTCCATCATTGCCCCTTCCTCTTTGGCCTCAGAGAAAGTGGACTTCAGTAGTTCCTCTGACTCAGAATCTGAGATGG
GACCTCAGGAAGCAACACAGGCAGAATCTGAAGATGGAAAGCTGACCCTTCCATTGGCTGGGATTATGCAGCATGATGCC
ACCAAGCTGTTGCCAAGTGTCACAGAACTTTTTCCAGAATTTCGACCTGGAAAGGTGTTACGTTTTCTACGTCTTTTTGG
ACCAGGGAAGAATGTCCCATCTGTTTGGCGGAGTGCTCGGAGAAAGAGGAAGAAGAAGCACCGTGAGCTGATACAGGAAG
AGCAGATCCAGGAGGTGGAGTGCTCAGTAGAATCAGAAGTCAGCCAGAAGTCTTTGTGGAACTACGACTACGCTCCACCA
CCACCTCCAGAGCAGTGTCTCTCTGATGATGAAATCACGATGATGGCTCCTGTGGAGTCCAAATTTTCCCAATCAACTGG
AGATATAGATAAAGTGACAGATACCAAACCAAGAGTGGCTGAGTGGCGTTATGGGCCTGCCCGACTGTGGTATGATATGC
TGGGTGTCCCTGAAGATGGCAGTGGGTTTGACTATGGCTTCAAACTGAGAAAGACAGAACATGAACCTGTGATAAAATCT
AGAATGATAGAGGAATTTAGGAAACTTGAGGAAAACAATGGCACTGATCTTCTGGCTGATGAAAACTTCCTGATGGTGAC
ACAGCTGCATTGGGAGGATGATATCATCTGGGATGGGGAGGATGTCAAACACAAAGGGACAAAACCTCAGCGTGCAAGCC
TGGCAGGCTGGCTTCCTTCTAGCATGACTAGGAATGCGATGGCTTACAATGTTCAGCAAGGTTTTGCAGCCACTCTTGAT
GATGACAAACCTTGGTACTCCATTTTTCCCATTGACAATGAGGATCTGGTATATGGACGCTGGGAGGACAATATCATTTG
GGATGCTCAGGCCATGCCCCGGCTGTTGGAACCTCCTGTTTTGACACTTGATCCCAATGATGAGAACCTCATTTTGGAAA
TTCCTGATGAGAAGGAAGAGGCCACCTCTAACTCCCCCTCCAAGGAGAGTAAGAAGGAATCATCTCTGAAGAAGAGTCGA
ATTCTCTTAGGGAAAACAGGAGTCATCAAGGAGGAACCACAGCAGAACATGTCTCAGCCAGAAGTGAAAGATCCATGGAA
TCTCTCCAATGATGAGTATTATTATCCCAAGCAACAGGGTCTTCGAGGCACCTTTGGAGGGAATATTATCCAGCATTCAA
TTCCTGCTGTGGAATTACGGCAGCCCTTCTTTCCCACCCACATGGGGCCCATCAAACTCCGGCAGTTCCATCGCCCACCT
CTGAAAAAGTACTCATTTGGTGCACTTTCTCAGCCAGGTCCCCACTCAGTCCAACCTTTGCTAAAGCACATCAAAAAAAA
GGCCAAGATGAGAGAACAAGAGAGGCAAGCTTCAGGTGGTGGAGAGATGTTTTTTATGCGCACACCTCAGGACCTCACAG
GCAAAGATGGTGATCTTATTCTTGCAGAATATAGTGAGGAAAATGGACCCTTAATGATGCAGGTTGGCATGGCAACCAAG
ATAAAGAACTATTATAAACGGAAACCTGGAAAAGATCCTGGAGCACCAGATTGTAAATATGGGGAAACTGTTTACTGCCA
TACATCTCCTTTCCTGGGTTCTCTCCATCCTGGCCAATTGCTGCAAGCATTTGAGAACAACCTTTTTCGTGCTCCAATTT
ATCTTCATAAGATGCCAGAAACTGATTTCTTGATCATTCGGACAAGACAGGGTTACTATATTCGGGAATTAGTGGATATT
TTTGTGGTTGGCCAGCAGTGTCCCTTGTTTGAAGTTCCTGGGCCTAACTCCAAAAGGGCCAATACGCATATTCGAGACTT
TCTACAGGTTTTTATTTACCGCCTTTTCTGGAAAAGTAAAGATCGGCCACGGAGGATACGAATGGAAGATATAAAAAAAG
CCTTTCCTTCCCATTCAGAAAGCAGCATCCGGAAGAGGCTAAAGCTCTGCGCTGACTTCAAACGCACAGGGATGGACTCA
AACTGGTGGGTGCTTAAGTCTGATTTTCGTTTACCAACGGAAGAAGAGATCAGAGCTATGGTGTCACCAGAGCAGTGCTG
TGCTTATTATAGCATGATAGCTGCAGAGCAACGACTGAAGGATGCTGGCTATGGTGAGAAATCCTTTTTTGCTCCAGAAG
AAGAAAATGAGGAAGATTTCCAGATGAAGATTGATGATGAAGTTCGCACTGCCCCTTGGAACACCACAAGGGCCTTCATT
GCTGCCATGAAGGGCAAGTGTCTGCTAGAGGTGACTGGGGTGGCAGATCCCACGGGGTGTGGTGAAGGATTCTCCTATGT
GAAGATTCCAAACAAACCAACACAGCAGAAGGATGATAAAGAACCGCAGCCAGTGAAGAAGACAGTGACAGGAACAGATG
CAGACCTTCGTCGCCTTTCCCTGAAAAATGCCAAGCAACTTCTACGTAAATTTGGTGTGCCTGAGGAAGAGATTAAAAAG
TTGTCCCGCTGGGAAGTGATTGATGTGGTGCGCACAATGTCAACAGAACAGGCTCGTTCTGGAGAGGGGCCCATGAGTAA
ATTTGCCCGTGGATCAAGGTTTTCTGTGGCTGAGCATCAAGAGCGTTACAAAGAGGAATGTCAGCGCATCTTTGACCTAC
AGAACAAGGTTCTGTCATCAACTGAAGTCTTATCAACTGACACAGACAGCAGCTCAGCTGAAGATAGTGACTTTGAAGAA
ATGGGAAAGAACATTGAGAACATGTTGCAGAACAAGAAAACCAGCTCTCAGCTTTCACGTGAACGGGAGGAACAGGAGCG
GAAGGAACTACAGCGAATGCTACTGGCAGCAGGCTCAGCAGCATCCGGAAACAATCACAGAGATGATGACACAGCTTCCG
TGACTAGCCTTAACTCTTCTGCCACTGGACGCTGTCTCAAGATTTATCGCACGTTTCGAGATGAAGAGGGGAAAGAGTAT
GTTCGCTGTGAGACAGTCCGAAAACCAGCTGTCATTGATGCCTATGTGCGCATACGGACTACAAAAGATGAGGAATTCAT
TCGAAAATTTGCCCTTTTTGATGAACAACATCGGGAAGAGATGCGAAAAGAACGGCGGAGGATTCAAGAGCAACTGAGGC
GGCTTAAGAGGAACCAGGAAAAGGAGAAGCTTAAGGGTCCTCCTGAGAAGAAGCCCAAGAAAATGAAGGAGCGTCCTGAC
CTAAAACTGAAATGTGGGGCATGTGGTGCCATTGGACACATGAGGACTAACAAATTCTGCCCCCTCTATTATCAAACAAA
TGCGCCACCTTCCAACCCTGTTGCCATGACAGAAGAACAGGAGGAGGAGTTGGAAAAGACAGTCATTCATAATGATAATG
AAGAACTTATCAAGGTTGAAGGGACCAAAATTGTCTTGGGGAAACAGCTAATTGAGAGTGCGGATGAGGTTCGCAGAAAA
TCTCTGGTTCTCAAGTTTCCTAAACAGCAGCTTCCTCCAAAGAAGAAACGGCGAGTTGGAACCACTGTTCACTGTGACTA
TTTGAATAGACCTCATAAGTCCATCCACCGGCGCCGCACAGACCCTATGGTGACGCTGTCGTCCATCTTGGAGTCTATCA
TCAATGACATGAGAGATCTTCCAAATACATACCCTTTCCACACTCCAGTCAATGCAAAGGTTGTAAAGGACTACTACAAA
ATCATCACTCGGCCAATGGACCTACAAACACTCCGCGAAAACGTGCGTAAACGCCTCTACCCATCTCGGGAAGAGTTCAG
AGAGCATCTGGAGCTAATTGTGAAAAATAGTGCAACCTACAATGGGCCAAAACACTCATTGACTCAGATCTCTCAATCCA
TGCTGGATCTCTGTGATGAAAAACTCAAAGAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCCTTGCTG
GATGATGATGACCAAGTGGCGTTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCAGTTCCAGATTCTTG
GCCATTTCATCACCCAGTTAATAAGAAATTTGTTCCAGATTATTACAAAGTGATTGTCAATCCAATGGATTTAGAGACCA
TACGTAAGAACATCTCCAAGCACAAGTATCAGAGTCGGGAGAGCTTTCTGGATGATGTAAACCTTATTCTGGCCAACAGT
GTTAAGTATAATGGACCTGAGAGTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGTTACCAGACATTGACTGA
GTATGATGAACATTTGACTCAACTTGAGAAGGATATTTGTACTGCTAAAGAAGCAGCTTTGGAGGAAGCAGAATTAGAAA
GCCTGGACCCAATGACCCCAGGGCCCTACACGCCTCAGCCTCCTGATTTGTATGATACCAACACATCCCTCAGTATGTCT
CGAGATGCCTCTGTATTTCAAGATGAGAGCAATATGTCTGTCTTGGATATTCCCAGTGCCACTCCAGAAAAGCAGGTAAC
ACAGGAAGGTGAAGATGGAGATGGTGATCTTGCAGATGAAGAGGAAGGAACTGTACAACAGCCTCAAGCCAGTGTCCTGT
ATGAGGATTTGCTTATGTCTGAAGGAGAAGATGATGAGGAAGATGCTGGGAGTGATGAAGAAGGAGACAATCCTTTCTCT
GCTATCCAGCTGAGTGAAAGTGGAAGTGACTCTGATGTGGGATCTGGTGGAATAAGACCCAAACAACCCCGCATGCTTCA
GGAGAACACAAGGATGGACATGGAAAATGAAGAAAGCATGATGTCCTATGAGGGAGACGGTGGGGAGGCTTCCCATGGTT
TGGAGGATAGCAACATCAGTTATGGGAGCTATGAGGAGCCTGATCCCAAGTCGAACACCCAAGACACAAGCTTCAGCAGC
ATCGGTGGGTATGAGGTATCAGAGGAGGAAGAAGATGAGGAGGAGGAAGAGCAGCGCTCTGGGCCGAGCGTACTAAGCCA
GGTCCACCTGTCAGAGGACGAGGAGGACAGTGAGGATTTCCACTCCATTGCTGGGGACAGTGACTTGGACTCTGATGAAT
GA

Library Parental gene expression (RPM)
bodymap2_liver 10 .86 RPM
bodymap2_lung 38 .57 RPM
bodymap2_breast 43 .50 RPM
bodymap2_adipose 54 .19 RPM
bodymap2_adrenal 53 .30 RPM
bodymap2_skeletal_muscle 24 .59 RPM
bodymap2_thyroid 46 .85 RPM
bodymap2_prostate 61 .19 RPM
bodymap2_colon 47 .04 RPM
bodymap2_testis 44 .25 RPM
bodymap2_brain 35 .07 RPM
bodymap2_heart 24 .83 RPM
bodymap2_white_blood_cells 83 .12 RPM
bodymap2_lymph_node 50 .00 RPM
bodymap2_ovary 69 .90 RPM
bodymap2_kidney 34 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Myotis lucifugus ENSMLUG00000009092 ortholog_many2many 1 retrogene
Macaca mulatta ENSMMUG00000005663 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000020453 ortholog_one2one 1 retrogene
Sarcophilus harrisii ENSSHAG00000005804 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_66 94.37 91.02
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Download FASTA sequences of all ENSG00000147133 retrocopies