RetrogeneDB ID: retro_mluc_306

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429810:1881168..1882527(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000000351
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000008313
• Aliases: None
• Description: None

Sequence

>retro_mluc_306
ATGGCTCAGCACTTCTCCCTGGCCGCCTGCGACGTGGTTGGCTTCGACCTGGACCACACTCTGTGTCGCTACAACCTGCC
CGAGAGCGCCCCGCTCATTTATGATAGCTTTGCTCAGTTCCTGGTCAAGGAGAAAGGATATGACAAGGAGTTGCTCACTG
TGACTCCAGAGGACTGGGACTTCTGTTGCAAGGGGTTGGCCTTGGATCTGGAAGATGGAAACTTCATTAAACTTGCAGAT
AATGGCACCGTCCTCAGGGCCAGCCACGGCACCAGGATGCTGGCCCCCGAGGAGCTGGCCAAGGAGTACGGCGGGAAGGA
GTGGAAGTACTTCATGTCTGACACTGGGATGGCTTTCCGATCAGGAAAGTATTATTTTTATGATAACTACTTTGACCTGC
CAGGAGCTCTTCTGTGTGCCAGAGTGGTGGACTCTTTAACAAAGCAGAACAACGGTCAGAAAACATTTGATTTTTGGAAG
GATATAGTTGCTGGTATTCAACACAATTATAAGATGTCAGCTTTTAGGGAAAACTGTGGGATATATTTTCCAGAAATAAA
AAGAGATCCAGGCAAGTATTTACACAGTTGTCCTAAATCTGTAAAAAAATGGCTTCGACAGCTGAAGAATGCTAGGAAAA
TTCTTGTATTAATCACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCAACCATATCCTGGGGAATGATTTTGCAGAT
CTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCATTTACCAAGTCAAAGACCTTTCCGGACACT
TGAGAATGACGAGGAGCAGGAAGCCCTGCCGTCTCTGGAGAAACCTGGCTGGTACTCCCAGGGGAACGCTGTGCACCTTT
ATGACCTGCTGAAGAAAATGACTGGCAAACCTGAGCCCCAGGTTGTGTACTTTGGTGACAGCATGCATTCAGATATTTTC
CCAGCCCGTCATTATAGCAATTGGGAGACAGTCCTCATCCTGGAAGAGCTCAAAGGGGACAGAGACTGGAAGCCTGAGGA
CTCAGAGCCCCTAGAGAAGAAAGGAAAATATGAGGGACAGAAGGGAAAGCCTCTATATTCATTATCTAAAAAATGGGGCT
CTTTTTTTACTGATTCCATTTCGGGACTGGAAAATACAGAAGACTCTTTGGTTTCTACGTGGTCCTGTAAGAGAATCAGT
ACTTACAGCACTATTGCAATTCCAAGTATTGAAGCTATAGCAGAATTACCCCTGGACTACAAATTTACAAGATTCTCTTC
AAACAATTCAAAAACAGCTGGCTACTATCCAAACCCTCCATTGGCCTTATCAAGTTTTGAAACATTGACAAACAAATAA

Alignment

ORF - retro_mluc_306 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.89 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IPSSLQLIYDSFAQFLVKEKGYDKELLTVTPEDWDFCCKGLALDLEDGNFIKLADNGTVLRASHGTRMLA
          .P.S..LIYDSFAQFLVKEKGYDKELLTVTPEDWDFCCKGLALDLEDGNFIKLADNGTVLRASHGTRMLA
Retrocopy LPESAPLIYDSFAQFLVKEKGYDKELLTVTPEDWDFCCKGLALDLEDGNFIKLADNGTVLRASHGTRMLA

Parental  PEELAKEYGGREWKYFMSDTGMAFRSGKYYFYDNYFDLPGALLCARVVDSLTKQNNGQKTFDFWKDIVAG
          PEELAKEYGG.EWKYFMSDTGMAFRSGKYYFYDNYFDLPGALLCARVVDSLTKQNNGQKTFDFWKDIVAG
Retrocopy PEELAKEYGGKEWKYFMSDTGMAFRSGKYYFYDNYFDLPGALLCARVVDSLTKQNNGQKTFDFWKDIVAG

Parental  IQHNYKMSAFRENCGIYFPEIKRDPGKYLHSCPESVKKWLQQLKNAGKILVLITSSHSDYCRLLCNHILG
          IQHNYKMSAFRENCGIYFPEIKRDPGKYLHSCP.SVKKWL.QLKNA.KILVLITSSHSDYCRLLCNHILG
Retrocopy IQHNYKMSAFRENCGIYFPEIKRDPGKYLHSCPKSVKKWLRQLKNARKILVLITSSHSDYCRLLCNHILG

Parental  NDFADLFDIVITNALKPGFFSHLPSQRPFRTLENDEEQEALPCLEKPGWYSQGNAVHLYDLLKKMTGKPE
          NDFADLFDIVITNALKPGFFSHLPSQRPFRTLENDEEQEALP.LEKPGWYSQGNAVHLYDLLKKMTGKPE
Retrocopy NDFADLFDIVITNALKPGFFSHLPSQRPFRTLENDEEQEALPSLEKPGWYSQGNAVHLYDLLKKMTGKPE

Parental  PQVVYFGDSMHSDIFPARHYSNWETVLILEELKGDRDWKPEDSEPLEKKGKYEGQKGKPLYSLSKKWGSF
          PQVVYFGDSMHSDIFPARHYSNWETVLILEELKGDRDWKPEDSEPLEKKGKYEGQKGKPLYSLSKKWGSF
Retrocopy PQVVYFGDSMHSDIFPARHYSNWETVLILEELKGDRDWKPEDSEPLEKKGKYEGQKGKPLYSLSKKWGSF

Parental  FTDSISGLENTEDSLVSTWSCKRISTYSTIAIPSIEAIAELPLDYKFTRFSSNNSKTAGYYPNPPLALSS
          FTDSISGLENTEDSLVSTWSCKRISTYSTIAIPSIEAIAELPLDYKFTRFSSNNSKTAGYYPNPPLALSS
Retrocopy FTDSISGLENTEDSLVSTWSCKRISTYSTIAIPSIEAIAELPLDYKFTRFSSNNSKTAGYYPNPPLALSS

Parental  FETLTNK
          FETLTNK
Retrocopy FETLTNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_306 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000178425	1 retrocopy	retro_hsap_4759,
Myotis lucifugus	ENSMLUG00000008313	1 retrocopy	retro_mluc_306 ,
Myotis lucifugus	ENSMLUG00000015418	1 retrocopy	retro_mluc_1559,
Nomascus leucogenys	ENSNLEG00000013080	1 retrocopy	retro_nleu_2344,
Pongo abelii	ENSPPYG00000016943	1 retrocopy	retro_pabe_3703,
Pan troglodytes	ENSPTRG00000018523	1 retrocopy	retro_ptro_3170,