Parental gene: | NT5DC1, ENSPTRG00000018523 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 6:117229927..117375562(+) |
>ENSPTRG00000018523
ATGGCTCAGCACTTCTCCCTGGCCGCCTGCGACGTGGTCGGATTCGACCTGGACCACACTCTGTGTCGCTACAACCTGCC
CGAGAGCGCCCCGCTCATTTATAATAGCTTTGCCCAGTTCCTAGTTAAGGAGAAAGGGTACAATAAGGAATTGCTCAATG
TGACCCCAGAGGATTGGGATTTCTGTTGCAAAGGTTTGGCATTGGATCTAGAAGATGGGAACTTCCTTAAACTTGCAAAT
AATGGCACTGTTCTCAGGGCAAGCCATGGCACCAAGATGATGACTCCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGA
GTGGAAGCACTTCTTGTCGGACACTGGAATGGCTTGCCGCTCAGGAAAGTATTACTTTTACGACAACTACTTTGACCTGC
CAGGAGCTCTTCTGTGTGCCAGGGTGGTGGACTATTTAACAAAACTGAACAATGGTCAAAAAACATTTGATTTTTGGAAG
GATATAGTTGCTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGGAAAACTGTGGAATATATTTTCCAGAAATAAA
AAGAGATCCAGGCAGATATTTACACAGTTGTCCTGAATCTGTGAAAAAATGGCTTCGACAGCTAAAGAATGCTGGGAAAA
TTCTTCTGTTAATTACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCGAATATATCCTTGGGAATGATTTTACAGAC
CTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCACTTACCAAGTCAGAGACCTTTCCGGACACT
CGAGAATGATGAGGAGCAGGAGGCGCTGCCATCTCTGGATAAACCTGGCTGGTACTCCCAAGGGAATGCTGTCCACCTCT
ATGAACTTCTGAAGAAAATGACTGGCAAACCTGAACCCAAGGTTGTTTATTTTGGTGACAGCATGCATTCAGATATTTTC
CCAGCTCGTCACTATAGTAATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAGGAGTCAGAG
GCCTGAGGAGTCAGAGCCTCTAGAGAAGAAAGGAAAATATGAGGGACCAAAAGCAAAACCTTTAAATACTTCATCTAAAA
AATGGGGCTCTTTTTTTATTGATTCAGTTTTGGGACTGGAAAATACAGAAGACTCCTTGGTTTATACATGGTCTTGTAAG
AGAATCAGTACTTACAGCACTATTGCAATTCCAAGTATTGAAGCAATCGCAGAATTACCTCTGGACTACAAATTTACAAG
ATTCTCTTCAAGCAATTCAAAAACAGCTGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATGAGACACTGATAT
CCAAATAA
ATGGCTCAGCACTTCTCCCTGGCCGCCTGCGACGTGGTCGGATTCGACCTGGACCACACTCTGTGTCGCTACAACCTGCC
CGAGAGCGCCCCGCTCATTTATAATAGCTTTGCCCAGTTCCTAGTTAAGGAGAAAGGGTACAATAAGGAATTGCTCAATG
TGACCCCAGAGGATTGGGATTTCTGTTGCAAAGGTTTGGCATTGGATCTAGAAGATGGGAACTTCCTTAAACTTGCAAAT
AATGGCACTGTTCTCAGGGCAAGCCATGGCACCAAGATGATGACTCCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGA
GTGGAAGCACTTCTTGTCGGACACTGGAATGGCTTGCCGCTCAGGAAAGTATTACTTTTACGACAACTACTTTGACCTGC
CAGGAGCTCTTCTGTGTGCCAGGGTGGTGGACTATTTAACAAAACTGAACAATGGTCAAAAAACATTTGATTTTTGGAAG
GATATAGTTGCTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGGAAAACTGTGGAATATATTTTCCAGAAATAAA
AAGAGATCCAGGCAGATATTTACACAGTTGTCCTGAATCTGTGAAAAAATGGCTTCGACAGCTAAAGAATGCTGGGAAAA
TTCTTCTGTTAATTACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCGAATATATCCTTGGGAATGATTTTACAGAC
CTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCACTTACCAAGTCAGAGACCTTTCCGGACACT
CGAGAATGATGAGGAGCAGGAGGCGCTGCCATCTCTGGATAAACCTGGCTGGTACTCCCAAGGGAATGCTGTCCACCTCT
ATGAACTTCTGAAGAAAATGACTGGCAAACCTGAACCCAAGGTTGTTTATTTTGGTGACAGCATGCATTCAGATATTTTC
CCAGCTCGTCACTATAGTAATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAGGAGTCAGAG
GCCTGAGGAGTCAGAGCCTCTAGAGAAGAAAGGAAAATATGAGGGACCAAAAGCAAAACCTTTAAATACTTCATCTAAAA
AATGGGGCTCTTTTTTTATTGATTCAGTTTTGGGACTGGAAAATACAGAAGACTCCTTGGTTTATACATGGTCTTGTAAG
AGAATCAGTACTTACAGCACTATTGCAATTCCAAGTATTGAAGCAATCGCAGAATTACCTCTGGACTACAAATTTACAAG
ATTCTCTTCAAGCAATTCAAAAACAGCTGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATGAGACACTGATAT
CCAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 16 .00 RPM |
| SRP007412_cerebellum | 8 .35 RPM |
| SRP007412_heart | 17 .49 RPM |
| SRP007412_kidney | 35 .64 RPM |
| SRP007412_liver | 14 .24 RPM |
| SRP007412_testis | 8 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000178425 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000008313 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013080 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016943 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_3170 | 90.00 | 82.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000018523 retrocopies