RetrogeneDB ID: retro_mluc_159

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:2930825..2931971(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008035
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017132
• Aliases: None
• Description: None

Sequence

>retro_mluc_159
ATGAAAGAGGTGAAGAGCGAGCGGGAGCGGGGGAGCCGGCGCAGGCACCTGGACGAGGACAGGGTGGCGAAGGCGGTGAT
GAAGGTGGTGGTGAAGCAAGAGCGCCTCAGCCCCGAGGCCGCGCCGGCCGGCGAGCCGGGCCGCCCTGGTCACCGCGGGG
ACCGAGCGCGGAGACGTAGCGGATCCCCAGCCAAGAAGAAAAAGTCCTCAGGGAGAAGAAGCAAGTCTCCTCGGAGTAAC
AGAAGCCGAAGTCCTCACCACTCGACAGTCAGAGTGAAGCAGGAGCGTGAAGATCATCCACCCCGGGGAGAACGGGGAGA
TCGGCAGCACCGGGAAGCATCAGAACAGGAGCACAGGCGAGCGAGGAATAGTGACCGAGGCAGGCACAGGGGCCACTCCC
ACCAGAGGAGAACCTATAACGAGAGACCTGGGAGTGGGCCGGCTCAGGGACGTGATCGAGACCTTCAGAACCTGCCGGCG
CAGGAAGCAGAGCGGGAGGTTTATGATGCCCGAAGGCGGGAGCATCGCCAAAAGAATGAAGTCAGGACCAGCGGTCATGA
GTCTCAGCAGTTGGTTCCTCCACCGGGTGGCAACAACAAAAACAAAGAGGTGCCCGTCAAGGAAAAGCCAAGCTTTGAAC
TTTCTGGGGCACTTCTTGAGGACACCAACACCTTCCGAGGTGTAGTCATTAAATATAGCGAGCCCCCCGAAGCACGTCTC
CCTAAAAAACGGTGGCGTCTCTACCCATTTAAAAATGACGAGGTGCTTCCTATCATGTACATTCATCGACAAAGCGCTTA
CTTCCTGGGGCGACACCGCCGGGTTGCAGACATCCCAATCGATCATCCCTCTTGTTCAAAGCAGCACGCGGTCTTCCAGT
ATAGGCTTGTGGAACACACCCGTGCTGATGGGACAGTTGGCCGCAGGGTGAAGCCCTACATCATTGACCTTGGTTCAGGC
AATGGAACATGCTTGAATAACAAGCGCATTGAGCCACAGAGATACTACGAACTGAAGGAAAAAGATGTACTTAAATTTGG
GTTCAGCAGCAGAGAGTATGTTCTGCTGCATGAGTCCTCTGACACCTCTGAAGTAGACAGGAAAGATGAGGAGGAGGAGG
AGGAGGAGGAAGTATCTGACAGCTAG

Alignment

ORF - retro_mluc_159 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.13 %
• Parental protein coverage: 85.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PAGEPGRPGHRGNRAQRRSRSPAKKKKSSGRRSKSPRSNRSRSPHHSTVKVKQEREDHPPRREREDRQHR
          PAGEPGRPGHRG.RA.RRS.SPAKKKKSSGRRSKSPRSNRSRSPHHSTV.VKQEREDHPPR.ER.DRQHR
Retrocopy PAGEPGRPGHRGDRARRRSGSPAKKKKSSGRRSKSPRSNRSRSPHHSTVRVKQEREDHPPRGERGDRQHR

Parental  EASEQEHRRARNSDRGRHRGHSHQRRTSNERPGSGPAQGRDRDLQNLPAQEAEREFYNARRREHRQKNEV
          EASEQEHRRARNSDRGRHRGHSHQRRT.NERPGSGPAQGRDRDLQNLPAQEAERE.Y.ARRREHRQKNEV
Retrocopy EASEQEHRRARNSDRGRHRGHSHQRRTYNERPGSGPAQGRDRDLQNLPAQEAEREVYDARRREHRQKNEV

Parental  STSGNESQELVPPPSGNNKNKEVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFK
          .TSG.ESQ.LVPPP.GNNKNKEVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEAR.PKKRWRLYPFK
Retrocopy RTSGHESQQLVPPPGGNNKNKEVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARLPKKRWRLYPFK

Parental  NDEVLPIMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGN
          NDEVLPIMYIHRQSAY.LGRHRR.ADIPIDHPSCSKQHAVFQYRLVE.TRADGTVGRRVKPYIIDLGSGN
Retrocopy NDEVLPIMYIHRQSAYFLGRHRRVADIPIDHPSCSKQHAVFQYRLVEHTRADGTVGRRVKPYIIDLGSGN

Parental  GTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRKEDEDEEEEEEVSDS
          GT.LNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRK.DE.EEEEEEVSDS
Retrocopy GTCLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEVDRK-DEEEEEEEEVSDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_159 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001963	1 retrocopy	retro_cjac_1094,
Myotis lucifugus	ENSMLUG00000017132	2 retrocopies	retro_mluc_1400, retro_mluc_159 ,
Mus musculus	ENSMUSG00000050213	2 retrocopies	retro_mmus_3038, retro_mmus_941,
Otolemur garnettii	ENSOGAG00000008634	2 retrocopies	retro_ogar_2306, retro_ogar_893,