RetrogeneDB ID:

retro_meug_162

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_4784:38282..38699(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000002944
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_162
GAAACCTAGCATTTGCTGGCAGAATGAGTTCCTGGGATAAAAGCAGAACTGGACAAAAGTAGCCCACATTACTTTCATGT
GGTTTTACAGGCCCACAAGATTCCTTCTTCAAGGAAGGCATTTTTAAATATGAACTACTTCTTCCAAAAGAATACCCAAT
GGTAGCTCCTAAAGTACATTTTATGACCAAAATTTATCTGTCTAATGTAAACTAGCTGAGAAGAGTATGTTTAGATATTT
TGGAATATAAATGGTTTCCATCCACTGCAGATCCATACAGCACTGCTCTCAACCCAAGCTTTGTTAAGTGCTCACAATCC
AGAAGATCCATTAGCAAATGATGCCGCAAAGTAATGGAAGAGCAAAGAAGTCCAAGCCATAGAACTAGCTACTAGGCCAC
ATGCCATAAAAAACATT

ORF - retro_meug_162 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.28 %
Parental protein coverage: 100. %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalETQRLLAEPVPGIKAEPDESNARYFHVVI-AGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN
ET..LLAE.VPGIKAE.D.S...YFHVV...GPQDS.F..G.FK.EL.LP.EYPM.APKV.FMTKIY..N
RetrocopyET*HLLAE*VPGIKAELDKSSPHYFHVVL<TGPQDSFFKEGIFKYELLLPKEYPMVAPKVHFMTKIYLSN
ParentalVDKLGRICLDILKDKWSPA-LQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA
V..L.R.CLDIL..KW.P..LQI.T.LLS.QALLSA.NP.DPLAND.A..WK..E.QAIE.A...TR..A
RetrocopyVN*LRRVCLDILEYKWFPS>LQIHTALLSTQALLSAHNPEDPLANDAAK*WKSKEVQAIELA---TRPHA
ParentalMNNI
..NI
RetrocopyIKNI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_162 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_162 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 29 parental genes, and 110 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098331 retrocopy
retro_amel_507,
Bos taurus ENSBTAG000000217672 retrocopies
retro_btau_1173, retro_btau_1614,
Canis familiaris ENSCAFG000000061771 retrocopy
retro_cfam_196,
Callithrix jacchus ENSCJAG000000029798 retrocopies
retro_cjac_141, retro_cjac_2121, retro_cjac_3142, retro_cjac_3148, retro_cjac_3216, retro_cjac_3241, retro_cjac_3329, retro_cjac_425,
Cavia porcellus ENSCPOG000000085815 retrocopies
retro_cpor_1548, retro_cpor_230, retro_cpor_24, retro_cpor_655, retro_cpor_750,
Dasypus novemcinctus ENSDNOG000000189529 retrocopies
retro_dnov_1002, retro_dnov_1066, retro_dnov_1107, retro_dnov_1185, retro_dnov_1487, retro_dnov_1977, retro_dnov_2598, retro_dnov_277, retro_dnov_492,
Echinops telfairi ENSETEG000000018825 retrocopies
retro_etel_1008, retro_etel_1417, retro_etel_1593, retro_etel_1661, retro_etel_2136,
Felis catus ENSFCAG000000042602 retrocopies
retro_fcat_1477, retro_fcat_1598,
Homo sapiens ENSG000001778893 retrocopies
retro_hsap_1392, retro_hsap_17, retro_hsap_3124,
Gorilla gorilla ENSGGOG000000243324 retrocopies
retro_ggor_1079, retro_ggor_2140, retro_ggor_2720, retro_ggor_2969,
Loxodonta africana ENSLAFG000000289851 retrocopy
retro_lafr_57,
Macropus eugenii ENSMEUG00000002944 7 retrocopies
retro_meug_1236, retro_meug_1287, retro_meug_1453, retro_meug_1473, retro_meug_162 , retro_meug_2009, retro_meug_31,
Microcebus murinus ENSMICG000000140814 retrocopies
retro_mmur_1351, retro_mmur_220, retro_mmur_267, retro_mmur_611,
Myotis lucifugus ENSMLUG000000099822 retrocopies
retro_mluc_2166, retro_mluc_453,
Macaca mulatta ENSMMUG000000206343 retrocopies
retro_mmul_1587, retro_mmul_234, retro_mmul_72,
Monodelphis domestica ENSMODG000000094512 retrocopies
retro_mdom_133, retro_mdom_1485,
Mus musculus ENSMUSG000000747816 retrocopies
retro_mmus_1031, retro_mmus_2656, retro_mmus_3031, retro_mmus_3294, retro_mmus_3510, retro_mmus_524,
Nomascus leucogenys ENSNLEG000000056952 retrocopies
retro_nleu_1078, retro_nleu_2279,
Oryctolagus cuniculus ENSOCUG000000112871 retrocopy
retro_ocun_100,
Otolemur garnettii ENSOGAG000000344617 retrocopies
retro_ogar_1502, retro_ogar_2178, retro_ogar_406, retro_ogar_408, retro_ogar_566, retro_ogar_584, retro_ogar_732,
Pongo abelii ENSPPYG000000048324 retrocopies
retro_pabe_113, retro_pabe_1152, retro_pabe_2580, retro_pabe_3326,
Pan troglodytes ENSPTRG000000052973 retrocopies
retro_ptro_2112, retro_ptro_3253, retro_ptro_956,
Pteropus vampyrus ENSPVAG000000137342 retrocopies
retro_pvam_1420, retro_pvam_358,
Sorex araneus ENSSARG000000059453 retrocopies
retro_sara_174, retro_sara_438, retro_sara_695,
Sarcophilus harrisii ENSSHAG000000077761 retrocopy
retro_shar_105,
Sus scrofa ENSSSCG000000009084 retrocopies
retro_sscr_101, retro_sscr_369, retro_sscr_698, retro_sscr_699,
Tupaia belangeri ENSTBEG0000001249710 retrocopies
retro_tbel_108, retro_tbel_1208, retro_tbel_1235, retro_tbel_1727, retro_tbel_2393, retro_tbel_2732, retro_tbel_275, retro_tbel_3151, retro_tbel_4655, retro_tbel_849,
Tarsius syrichta ENSTSYG000000088005 retrocopies
retro_tsyr_1476, retro_tsyr_1754, retro_tsyr_207, retro_tsyr_348, retro_tsyr_5,
Tursiops truncatus ENSTTRG000000033113 retrocopies
retro_ttru_1235, retro_ttru_286, retro_ttru_702,




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