Parental gene:

ENSFCAG00000004260

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:B4:117162760..117164160(-)


>ENSFCAG00000004260
TTAAGTCCAATTCCAAGAGTGTTCAGCAAAGAAACCCAGCGTTTGCTGGCGGAACCAGTTCCTGGCATTAAAGCAGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCCCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCGATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCATTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAA

Library Parental gene expression (RPM)
SRP017611_liver 8 .29 RPM
SRP017611_kidney 18 .24 RPM
SRP017611_brain 40 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009833 ortholog_one2one 1 retrogene
retro_amel_507,
Canis familiaris ENSCAFG00000006177 possible_ortholog 1 retrogene
retro_cfam_196,
Callithrix jacchus ENSCJAG00000002979 possible_ortholog 8 retrogenes
retro_cjac_141, retro_cjac_2121, retro_cjac_3142, retro_cjac_3148, retro_cjac_3216, retro_cjac_3241, retro_cjac_3329, retro_cjac_425,
Cavia porcellus ENSCPOG00000008581 ortholog_one2one 5 retrogenes
retro_cpor_1548, retro_cpor_230, retro_cpor_24, retro_cpor_655, retro_cpor_750,
Echinops telfairi ENSETEG00000001882 possible_ortholog 5 retrogenes
retro_etel_1008, retro_etel_1417, retro_etel_1593, retro_etel_1661, retro_etel_2136,
Homo sapiens ENSG00000177889 possible_ortholog 3 retrogenes
retro_hsap_1392, retro_hsap_17, retro_hsap_3124,
Loxodonta africana ENSLAFG00000028985 possible_ortholog 1 retrogene
retro_lafr_57,
Macropus eugenii ENSMEUG00000002944 possible_ortholog 7 retrogenes
retro_meug_1236, retro_meug_1287, retro_meug_1453, retro_meug_1473, retro_meug_162, retro_meug_2009, retro_meug_31,
Myotis lucifugus ENSMLUG00000009982 ortholog_one2one 2 retrogenes
retro_mluc_2166, retro_mluc_453,
Macaca mulatta ENSMMUG00000020634 ortholog_one2one 3 retrogenes
retro_mmul_1587, retro_mmul_234, retro_mmul_72,
Monodelphis domestica ENSMODG00000009451 possible_ortholog 2 retrogenes
retro_mdom_133, retro_mdom_1485,
Oryctolagus cuniculus ENSOCUG00000011287 ortholog_one2one 1 retrogene
retro_ocun_100,
Otolemur garnettii ENSOGAG00000034461 ortholog_one2one 7 retrogenes
retro_ogar_1502, retro_ogar_2178, retro_ogar_406, retro_ogar_408, retro_ogar_566, retro_ogar_584, retro_ogar_732,
Pongo abelii ENSPPYG00000004832 possible_ortholog 4 retrogenes
retro_pabe_113, retro_pabe_1152, retro_pabe_2580, retro_pabe_3326,
Pan troglodytes ENSPTRG00000005297 possible_ortholog 3 retrogenes
retro_ptro_2112, retro_ptro_3253, retro_ptro_956,
Sorex araneus ENSSARG00000005945 ortholog_one2one 3 retrogenes
retro_sara_174, retro_sara_438, retro_sara_695,
Sarcophilus harrisii ENSSHAG00000007776 possible_ortholog 1 retrogene
retro_shar_105,
Tarsius syrichta ENSTSYG00000008800 ortholog_one2one 5 retrogenes
retro_tsyr_1476, retro_tsyr_1754, retro_tsyr_207, retro_tsyr_348, retro_tsyr_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1477 84.11 98.03
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2. retro_fcat_1598 80.82 94.74
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Download FASTA sequences of all ENSFCAG00000004260 retrocopies