RetrogeneDB ID: retro_meug_1358

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold380094:447..1127(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPAG7
• Ensembl ID: ENSMEUG00000007933
• Aliases: None
• Description: sperm associated antigen 7 [Source:HGNC Symbol;Acc:11216]

Sequence

>retro_meug_1358
ATGGCGGACCTACTGGACTCTATTCCAAGCTCGATGGGGAAGCTGCCCAGTGGTGGTGACCAGGAGACCCACTGTAAGGC
CCAAGAACAGACTGCTTGCCTGAAGAAATTCCAGGAATAGGAGAAGCATCAGAAAGTGGAATTTTGAAAGTAGATGGAGA
AAGAGGTGCCAGATTTCATCCAGGACAGTGGTCAGACCAAGAGAAAGTTCCAGCCAATGAACAAGATTGAGAAGAGTATA
TTACATGATGTTGTGGAGTTGACTAGCCTAATATCATTCTCCTTTAGGAAGGATGATGAATTCCAATATGTCATGATCTT
CAAAAAGGAGTTTGCACACTCTGATGAAGAGCTTGACTCATACAACCATGGGGAGGAGTGGGATCCACAGGAGGAAGAGG
AGAAACAGAGACAGAAAGAGTTAGCCTGGTGGAAGGGGAAGAAGCTGCCCAGCAAGGCCCTGCTGTTGTGAACCCTGTGA
TTGACTACAAGGGCAAATACAGTCACCTCATTGGGAAAGGGGCAGCCAAGGATACTGTCCACATGCTACAGGTCAACAAG
ACCTATGACAGTGCTCCAGTAACCAATAAGAGGGACACATGCTCCACTGAGGAAGCCATGAATGATATCAATGCCAAGAA
ACATCTTCGTCAGAGTGGAGAGGAAGGGACTTCCAGCTCC

Alignment

ORF - retro_meug_1358 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MADLLGSILSSMEKPPSVGDQETRRKAREQAACLKKLQEQEKRQKVEFRKRMEKEVSDFIQDSGQTKRKF
          MADLL.SI.SSM.K.PS.GDQET..KA.EQ.ACLKK.QE.EK.QKVEF.K.MEKEV.DFIQDSGQTKRKF
Retrocopy MADLLDSIPSSMGKLPSGGDQETHCKAQEQTACLKKFQE*EKHQKVEF*K*MEKEVPDFIQDSGQTKRKF

Parental  QPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELDSYRRGEEWDPQQAEEKRRLKE
          QPMNKIE.SILHDVVE...L.SFSF..DDE..YVMIFKKEFA.SDEELDSY..GEEWDPQ..EEK.R.KE
Retrocopy QPMNKIEKSILHDVVELTSLISFSFRKDDEFQYVMIFKKEFAHSDEELDSYNHGEEWDPQEEEEKQRQKE

Parental  LAQW-QEEEAARQGPAVVSPVSDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNE
          LA.W...EEAA.QGPAVV.PV.DYK.KYSHLIGKGAAKD..HMLQ.NKTY...PV.NKRDT.S.EEAMN.
Retrocopy LAWW<EGEEAAQQGPAVVNPVIDYKGKYSHLIGKGAAKDTVHMLQVNKTYDSAPVTNKRDTCSTEEAMND

Parental  IRAKKRLRQSGEEGTPSS
          I.AKK.LRQSGEEGT.SS
Retrocopy INAKKHLRQSGEEGTSSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1358 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1358 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006299	1 retrocopy	retro_amel_964,
Canis familiaris	ENSCAFG00000015761	1 retrocopy	retro_cfam_1417,
Dasypus novemcinctus	ENSDNOG00000011669	1 retrocopy	retro_dnov_1149,
Echinops telfairi	ENSETEG00000020098	1 retrocopy	retro_etel_1489,
Felis catus	ENSFCAG00000030469	1 retrocopy	retro_fcat_833,
Macropus eugenii	ENSMEUG00000007933	1 retrocopy	retro_meug_1358 ,
Myotis lucifugus	ENSMLUG00000014031	1 retrocopy	retro_mluc_1561,
Mus musculus	ENSMUSG00000018287	1 retrocopy	retro_mmus_2553,
Oryctolagus cuniculus	ENSOCUG00000001108	1 retrocopy	retro_ocun_1103,