RetrogeneDB ID: retro_fcat_833

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B3:49150501..49151172(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPAG7
• Ensembl ID: ENSFCAG00000030469
• Aliases: None
• Description: sperm associated antigen 7 [Source:HGNC Symbol;Acc:11216]

Sequence

>retro_fcat_833
ATGGCAGACCTACTAGGCTCCATCCTGAACTCCCTGGAGAAGTCACCCAGTCTCGGTGACCAGGAGTCTCGGCACAAGGC
CCAAGAGCAGGTCGCTCGCCTGAAGAAACTACAGGAGCAGGAGAAACAACAGAAAGTGGAGTTTCATAAAGGATGGAGAA
AGAGATGTCAGATTTCATCCAAGACAGTGGGCAGATTAAGAAAAAGTTTCAGCCAATGAACGAGATAGAGAGGAGCACCC
TACACAATATGGTGGAAGTGGCTGGCCTGACATCCTTCTCCTTCAGAGATGATGAGTGTCTCTATGTCATGATCTTCAAA
AAGGAGTTTGCATGCTCAGATGAAGAGCTGGACTCCTATCATTATGGGGAGGAGTGGAACCCCCAGGAGGCTGAGGAGAA
ACCCCAACTGAAGGAGCTGGCCCAGTGGCAAGAGGAGGCAGCCTAGCAGGGACCTGTGATGGGGAGCCCTGCTAGTGACA
ACAAGGACAAGTACAGCCGCTTAATCGGCAAGGCAGCAGCCAAGGATGTTACAGGCCACATGCTACAGGCCAACAAGACC
TACAGCTGTGTGCCCATGGCCAACAAGAGGGACATGTGTTCCATCAAAGAGGCCATGAATGAGATCCAGGCCAAGAAGGA
TCCGCAACAGAGCAGGGAAGAGTTGCCACCT

Alignment

ORF - retro_fcat_833 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.74 %
• Parental protein coverage: 99.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MADLLGSILSSMEKPPSLGDQESRRKAREQAARLKKLQEQEKQQKVEFRK-RMEKEVSDFIQDSRQIKKK
          MADLLGSIL.S.EK.PSLGDQESR.KA.EQ.ARLKKLQEQEKQQKVEF.K.RMEKE.SDFIQDS.QIKKK
Retrocopy MADLLGSILNSLEKSPSLGDQESRHKAQEQVARLKKLQEQEKQQKVEFHK<RMEKEMSDFIQDSGQIKKK

Parental  FQPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELESYRRGEEWDPQKAEEKRKLK
          FQPMN.IERS.LH..VEVAGLTSFSF..DDEC.YVMIFKKEFA.SDEEL.SY..GEEW.PQ.AEEK..LK
Retrocopy FQPMNEIERSTLHNMVEVAGLTSFSF-RDDECLYVMIFKKEFACSDEELDSYHYGEEWNPQEAEEKPQLK

Parental  ELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKD-AAHMLQANKTYGCVPVANKRDTRSIEEAMN
          ELAQ.Q.EEAA.QGPV..SPASD.KDKYS.LIGK.AAKD...HMLQANKTY.CVP.ANKRD..SI.EAMN
Retrocopy ELAQWQ-EEAA*QGPVMGSPASDNKDKYSRLIGKAAAKDVTGHMLQANKTYSCVPMANKRDMCSIKEAMN

Parental  EIRAKKRLRQSGEELPP
          EI.AKK...QS.EELPP
Retrocopy EIQAKKDPQQSREELPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	13.08 RPM
SRP017611_kidney	0.00 RPM	16.28 RPM
SRP017611_liver	0.00 RPM	5.76 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_833 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_833 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006299	1 retrocopy	retro_amel_964,
Canis familiaris	ENSCAFG00000015761	1 retrocopy	retro_cfam_1417,
Dasypus novemcinctus	ENSDNOG00000011669	1 retrocopy	retro_dnov_1149,
Echinops telfairi	ENSETEG00000020098	1 retrocopy	retro_etel_1489,
Felis catus	ENSFCAG00000030469	1 retrocopy	retro_fcat_833 ,
Macropus eugenii	ENSMEUG00000007933	1 retrocopy	retro_meug_1358,
Myotis lucifugus	ENSMLUG00000014031	1 retrocopy	retro_mluc_1561,
Mus musculus	ENSMUSG00000018287	1 retrocopy	retro_mmus_2553,
Oryctolagus cuniculus	ENSOCUG00000001108	1 retrocopy	retro_ocun_1103,