RetrogeneDB ID: retro_dmel_30

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: X:19425102..19425654(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0031026
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG7222
• Ensembl ID: FBgn0033551
• Aliases: None
• Description: None

Sequence

>retro_dmel_30
ATGTTCCTGAATGCCCTGCGAAGGATGCGCTGCCTGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGA
GCCGGTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACACTTTTCCGCTGGGCTTGGGTGTCTTCCATTCCG
GCGTCCAGTTGTACGGGCGAGAGTACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAGATTCATCCCTGC
AATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCGGAAGAGCATTCTGCTCGGCTACACCGACTTTACCTGCGCTGA
AGTGAAGCGCGTTATCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTGACCAGCAAGAATTGCAACCACT
TCTCCAACTGCCTGGCGCATCTCGTCTGTGGCCGTAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGTGT
GTCCCATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCTCACTTCCGTCAATTTCAGCTCTAA

Alignment

ORF - retro_dmel_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.33 %
• Parental protein coverage: 74.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GNEELLPSNMGTREPVILNVYDMYWINEYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISP-RDH
          G..E........REPV.LN.YD....N.YT...GLGVFHSGV...G.E.A.........G.FEI.P....
Retrocopy GDREISTEDIEQREPVMLNIYDLSTSNNYTFPLGLGVFHSGVQLYGREYAFLALNLSISGIFEIHPCNGQ

Parental  DELGDQFQFRQSIQIGCTDFTYEEVRRIVEELGNQFRGDRYHLMNNNCNHFSGSLTQILCGQEIPSWVNR
          .ELG..F.FR.SI..G.TDFT..EV.R....LG..FRG..YHL...NCNHFS..L....CG..IP.WVNR
Retrocopy EELGEHFRFRKSILLGYTDFTCAEVKRVINLLGFEFRGTSYHLTSKNCNHFSNCLAHLVCGRKIPRWVNR

Parental  LAHFSSCVPFLQR
          LA....CVPFL.R
Retrocopy LAYLITCVPFLER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_30 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_30 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000016	1 retrocopy	retro_chof_2439,
Dasypus novemcinctus	ENSDNOG00000003484	3 retrocopies	retro_dnov_1042, retro_dnov_2533, retro_dnov_539,
Erinaceus europaeus	ENSEEUG00000009507	2 retrocopies	retro_eeur_394, retro_eeur_470,
Homo sapiens	ENSG00000121644	1 retrocopy	retro_hsap_2071,
Gorilla gorilla	ENSGGOG00000009797	1 retrocopy	retro_ggor_1493,
Nomascus leucogenys	ENSNLEG00000004019	1 retrocopy	retro_nleu_2734,
Ochotona princeps	ENSOPRG00000015368	2 retrocopies	retro_opri_1007, retro_opri_963,
Pongo abelii	ENSPPYG00000000055	1 retrocopy	retro_pabe_1685,
Pan troglodytes	ENSPTRG00000002180	1 retrocopy	retro_ptro_1384,
Sus scrofa	ENSSSCG00000010876	1 retrocopy	retro_sscr_388,
Drosophila melanogaster	FBgn0033551	1 retrocopy	retro_dmel_30 ,