Parental gene:

XB3, OS05G0112000

Aliases:None
Description:E3 ubiquitin-protein ligase XB3 [Source:UniProtKB/Swiss-Prot;Acc:Q65XV2]
Organism:Rice subsp. japonica (Oryza sativa japonica)
Coordinates:5:640320..643316(-)


>OS05G0112000
ATGGGTCACGGTGTCAGCTGCGCCCGCACCGGCGACGAGCACGACTTCTTCCGGGCGGCGCAGCTCGGCGACCTCGACGC
CCTGGCCGCCCTCCTCGCCGCCGACCCTTCCCTCGCTCGCCGCGCCACCCTCTACGACCGCCTCTCCGTCCTCCACATCG
CCGCCGCCAATGGCCGCATCGAGGTGCTCTCCATGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAG
CAGACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAATATCTT
GATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGCCACGTCGACTGCCTGCAGGCCATCC
TCGCCGCCGCGCAGACCACGCCGGTGGCCGACTCATGGGGTTTCGCCCGGTTCGTCAACGTCAGGGACGACCACGGCGCC
ACTCCGCTGCATCTCGCGGCCAGGCAGGGGCGGCCGGGGTGCGTGCAGGTGTTGCTGGAGAACGGCGCCATTGTGTCGGC
TTTGACAGGATCATATGGCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGA
AGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGGAGAATTCCCTATTCTGTTGCGCTGAAACGGAAC
CATGGAGCATGTGCAGCTTTGCTGAACCCTACATCAGCAGAGCCCATGGTGTGGCCATCCCCACTTAAGTTCATCAGTGA
GCTTGAACCAGAAGCTAAGGCTCTCCTGGAAGCAGCTCTGATGGAAGCCAACAGGGAGAGGGAGAAGAAAATCCTGAATG
GCACAAAGTACTCCCTGCCATCCCCTTCGCCCGGTGATGACAGTGCCGATGACGATGCATGCTCAGAGGTGAGCGACACG
GAGCTTTGCTGCATCTGCTTCGACCAGGCTTGCACCATTGAGGTGCAAGACTGTGGACATCAAATGTGTGCACCGTGCAC
GCTGGCACTGTGCTGTCACAACAAACCCAATCCGACGACCCTGACACCGCCCTCACCGGCCTGCCCATTCTGCCGGGGCA
GCATCTCACGGCTGGTGGTGGCCCAAACAAGGTCTGCTTGTGATCCTGACAAGCCGTCATCCCTGCAGCTCACCCGGAAG
CGGTCGCGTCGATCTCACAACCTCAGTGAGGGCAGCAGCAGCTTCAAAGGGCTACCTTCGGCCATGGGCTCCTTCTCAAA
GCTTGGCCGTGGCTCGAGCCGCATGGCGGACAGTGACAGCAGCAACCTGGACAAGCCTGAGCACGATCTATGA

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA018946 ortholog_one2one 1 retrogene
retro_oind_45,
Leersia perrieri LPERR05G00860 ortholog_one2one 1 retrogene
retro_lper_10,
Oryza barthii OBART05G00890 ortholog_one2one 1 retrogene
retro_obar_26,
Oryza glumaepatula OGLUM05G00910 ortholog_one2one 1 retrogene
retro_oglu_21,
Oryza meridionalis OMERI05G00950 ortholog_one2one 1 retrogene
retro_omer_12,
Oryza nivara ONIVA05G00830 ortholog_one2one 1 retrogene
retro_oniv_6,
Oryza punctata OPUNC05G00800 ortholog_one2one 1 retrogene
retro_opun_25,
Oryza glaberrima ORGLA05G0009300 ortholog_one2one 1 retrogene
retro_ogla_12,
Oryza rufipogon ORUFI05G00870 ortholog_one2one 1 retrogene
retro_oruf_36,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_osat_41 63.59 77.78
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Download FASTA sequences of all OS05G0112000 retrocopies