Parental gene:

CCDC58, ENSSSCG00000025107

Aliases:None
Description:coiled-coil domain containing 58 [Source:HGNC Symbol;Acc:31136]
Organism:Pig (Sus scrofa)
Coordinates:13:147763385..147782335(+)


>ENSSSCG00000025107
ATGGCGGCGCCCAGTGGCAGTGTGAACTGTGAGGAGTTCGCCGAGTTCCAGGAATTACTCAAGGTGATGAGGACGATCGA
TGACAGAATAGTACATGAATTAAACACTACGGTTCCAACAGCTTCCTTTGCAGGGAAAATCGATGCCAGCCAAACCTGTA
AACAACTTTATGAGTCTTTGATGGAGGCTCATGCCAGTAGAGACAGAGTCATAAAAAACTGTATAGCTCAGACCTCAGCA
GTAGTCAAACAACTTCGAGAAGAGAGAGAAAAGAATTTGGATGATTTAACGTTATTAAAGCAACTTAGAAAAGAACAGAC
AAAGCTAAAGGCAGTTTTTAGTATGAACAATTCAGACACACTTTATTATGTGAAACACATTGCTGTCTTTCAGGAGAGGG
GGCTTAAGGGATACCCTCCACCCTTCCTTCCC

Library Parental gene expression (RPM)
SRP014902_placenta 0 .53 RPM
SRP014902_testis 1 .84 RPM
SRP018856_adipose 4 .02 RPM
SRP018288_kidney 7 .09 RPM
SRP018288_lung 6 .92 RPM
SRP018288_liver 8 .00 RPM
SRP018288_heart 12 .89 RPM
SRP035408_liver 10 .04 RPM
SRP035408_brain 6 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011138 ortholog_one2one 4 retrogenes
retro_btau_1723, retro_btau_1791, retro_btau_1815, retro_btau_328,
Choloepus hoffmanni ENSCHOG00000004505 ortholog_one2one 1 retrogene
retro_chof_1072,
Callithrix jacchus ENSCJAG00000008132 ortholog_one2many 2 retrogenes
retro_cjac_294, retro_cjac_4115,
Dasypus novemcinctus ENSDNOG00000005535 ortholog_one2one 1 retrogene
retro_dnov_743,
Equus caballus ENSECAG00000023743 ortholog_one2one 2 retrogenes
retro_ecab_1088, retro_ecab_458,
Echinops telfairi ENSETEG00000003564 ortholog_one2one 3 retrogenes
retro_etel_1361, retro_etel_228, retro_etel_980,
Homo sapiens ENSG00000160124 ortholog_one2one 3 retrogenes
retro_hsap_1871, retro_hsap_1910, retro_hsap_676,
Gorilla gorilla ENSGGOG00000001964 ortholog_one2many 9 retrogenes
retro_ggor_132, retro_ggor_1369, retro_ggor_1370, retro_ggor_1939, retro_ggor_2951, retro_ggor_2952, retro_ggor_2953, retro_ggor_582, retro_ggor_722,
Loxodonta africana ENSLAFG00000016049 ortholog_one2one 1 retrogene
retro_lafr_227,
Myotis lucifugus ENSMLUG00000000937 ortholog_one2one 2 retrogenes
retro_mluc_2530, retro_mluc_634,
Macaca mulatta ENSMMUG00000011919 ortholog_one2one 4 retrogenes
retro_mmul_1104, retro_mmul_2414, retro_mmul_2531, retro_mmul_723,
Monodelphis domestica ENSMODG00000018298 ortholog_one2one 1 retrogene
retro_mdom_1936,
Mustela putorius furo ENSMPUG00000004777 ortholog_one2one 1 retrogene
retro_mputfur_194,
Mus musculus ENSMUSG00000075229 ortholog_one2one 1 retrogene
retro_mmus_1233,
Nomascus leucogenys ENSNLEG00000000291 ortholog_one2one 6 retrogenes
retro_nleu_1236, retro_nleu_1248, retro_nleu_2697, retro_nleu_390, retro_nleu_435, retro_nleu_683,
Oryctolagus cuniculus ENSOCUG00000002682 ortholog_one2one 2 retrogenes
retro_ocun_724, retro_ocun_839,
Otolemur garnettii ENSOGAG00000003190 ortholog_one2one 2 retrogenes
retro_ogar_2498, retro_ogar_817,
Pongo abelii ENSPPYG00000013486 ortholog_one2one 5 retrogenes
retro_pabe_1551, retro_pabe_3694, retro_pabe_3695, retro_pabe_544, retro_pabe_768,
Pteropus vampyrus ENSPVAG00000012707 ortholog_one2one 2 retrogenes
retro_pvam_1127, retro_pvam_1318,
Rattus norvegicus ENSRNOG00000031653 ortholog_one2one 2 retrogenes
retro_rnor_1013, retro_rnor_1576,
Sorex araneus ENSSARG00000004054 ortholog_one2one 1 retrogene
retro_sara_596,
Ictidomys tridecemlineatus ENSSTOG00000004419 ortholog_one2one 1 retrogene
retro_itri_247,
Tupaia belangeri ENSTBEG00000003196 ortholog_one2one 6 retrogenes
retro_tbel_208, retro_tbel_2214, retro_tbel_2781, retro_tbel_2882, retro_tbel_4574, retro_tbel_846,
Tursiops truncatus ENSTTRG00000013399 ortholog_one2one 1 retrogene
retro_ttru_72,
Vicugna pacos ENSVPAG00000002150 ortholog_one2one 1 retrogene
retro_vpac_445,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_835 82.89 52.08
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2. retro_sscr_1053 83.78 76.39
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Download FASTA sequences of all ENSSSCG00000025107 retrocopies