Parental gene:

SMN1, ENSSSCG00000016970

Aliases:None
Description:Sus scrofa survival of motor neuron 1, telomeric (SMN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001130735]
Organism:Pig (Sus scrofa)
Coordinates:16:51686211..51724239(-)


>ENSSSCG00000016970
ATGGCGATGGGCGGCGGTGGCGGCGGCAGCGGTGTTCCTGAGGCGGAGGACTCGGTGCTGTTCCGGCGCGGTGCAGGCCA
GAGTGATGATTCGGACATTTGGGATGATACAGCGTTGATAAAAGCTTATGATAAAGCTGTGGCTTCATTTAAGCATGCTC
TAAAGAATGGTGACATTTCCGAAGCTTCAGATAAACCAAAAGCCACACCTAAAAGAAAACCTCCTAAGAAGAATAAAAGC
CAAAAAAAGAATACCACAGCCTCCTTGAAGCAGTGGAAGGTTGGTGACAGATGTTCTGCCATTTGGTCGGAAGATGGCTG
CATTTACCCAGCTACCATTGCTTCGATTGATTTTAAGAGAGAAACCTGTATTGTGGTTTACACTGGATATGGAAATAGAG
AAGAGCAAAATCTGTCTGATTTACTTTCCCCCACCTCTGAAGTAGCTAATAATATAGAAGAGAATGCTCAGGAGAATGAA
AATGAAAGTCAAATTTCCACAGATGAAAGTGAGAGCTCCTCCAGATCTCCTGGAAATAAGCCAAATAACATCAAGTCAAA
AGCTGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCTATGCCAGGAGCAGGTCTTGGACCAAGAAAGCCAGGTCTAA
AATTCAACGGCCCACCACCACCACCACCGCCACCGCCACACTTCCTGTCATGCTGGCTGCCTCCGTTTCCTTCTGGACCA
CCAATAATTCCCCCCCCACCTCCTATATGTCCAGATTCTCTGGATGATGCTGATGCTTTGGGAAGTATGTTAATCTCTTG
GTACATGAGTGGCTATCATACTGGTTACTATATGGGTTTCAAACAAAATCAAAAAGAAGGAAGATGCTCACATTTCAATT
AA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .69 RPM
SRP014902_testis 22 .35 RPM
SRP018856_adipose 33 .25 RPM
SRP018288_kidney 37 .83 RPM
SRP018288_lung 27 .29 RPM
SRP018288_liver 25 .59 RPM
SRP018288_heart 17 .08 RPM
SRP035408_liver 20 .78 RPM
SRP035408_brain 30 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000012328 ortholog_one2many 1 retrogene
retro_cpor_988,
Dasypus novemcinctus ENSDNOG00000007283 ortholog_one2many 4 retrogenes
retro_dnov_1239, retro_dnov_1613, retro_dnov_1637, retro_dnov_2175,
Echinops telfairi ENSETEG00000001406 ortholog_one2many 2 retrogenes
retro_etel_1549, retro_etel_2012,
Homo sapiens ENSG00000205571 ortholog_many2many 1 retrogene
retro_hsap_4140,
Gorilla gorilla ENSGGOG00000026704 ortholog_many2many 1 retrogene
retro_ggor_2780,
Myotis lucifugus ENSMLUG00000010603 ortholog_one2many 1 retrogene
retro_mluc_1623,
Macaca mulatta ENSMMUG00000020214 ortholog_many2many 1 retrogene
retro_mmul_216,
Nomascus leucogenys ENSNLEG00000004454 ortholog_one2many 1 retrogene
retro_nleu_1054,
Oryctolagus cuniculus ENSOCUG00000017097 ortholog_many2many 1 retrogene
retro_ocun_617,
Pan troglodytes ENSPTRG00000016955 ortholog_one2many 1 retrogene
retro_ptro_2813,
Ictidomys tridecemlineatus ENSSTOG00000012288 ortholog_one2many 1 retrogene
retro_itri_968,
Tupaia belangeri ENSTBEG00000002399 ortholog_one2many 1 retrogene
retro_tbel_1033,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_654 83.81 82.94
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Download FASTA sequences of all ENSSSCG00000016970 retrocopies