Parental gene:

SMN1, ENSPTRG00000016955

Aliases:SMN1, SMN2
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:45526055..45552822(+)


>ENSPTRG00000016955
ATGGCGATGAGCAGCGGCGGCAGTGGTGGCGGCGTCCCGGAGCAGGAGGATTCCGTGCTGTTCCGGCGCGGCACAGGCCA
GAGCGATGATTCTGACATTTGGGATGATACAGCATTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAGCATGCTC
TAAAGAATGGTGACATTTGTGAAACTTCAGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGC
CAAAAGAAGAATACTGCAGCTTCCTTACAACAGTGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTG
CATTTACCCAGCTACCATTGCTTCAATTGATTTCAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAG
AGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAGAATGCTCAAGAGAATGAA
AATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATC
TGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAGCCAGGTCTAAAAT
TCAATGGCCCACCACCGCCACTGCCACCACCACCACCACCACCACCCCACTTACTATCATGCTGGCTGCCTCCATTTCCT
TCTGGACCACCAATAATTCCCCCACCACCTCCCATATGTCCAGATTCTCTTGATGATGCTGATGCTTTGGGAAGTATGTT
AATTTCATGGTACATGAGTGGCTATCATACTGGCTATTATATGGGTTTCAGACAAAATCAAAAAGAAGGAAGGTGCTCAC
ATTCCTTAAATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 8 .83 RPM
SRP007412_cerebellum 13 .26 RPM
SRP007412_heart 6 .18 RPM
SRP007412_kidney 8 .53 RPM
SRP007412_liver 9 .43 RPM
SRP007412_testis 18 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000012328 ortholog_one2one 1 retrogene
retro_cpor_988,
Dasypus novemcinctus ENSDNOG00000007283 ortholog_one2one 4 retrogenes
retro_dnov_1239, retro_dnov_1613, retro_dnov_1637, retro_dnov_2175,
Echinops telfairi ENSETEG00000001406 ortholog_one2one 2 retrogenes
retro_etel_1549, retro_etel_2012,
Homo sapiens ENSG00000205571 ortholog_one2many 1 retrogene
retro_hsap_4140,
Gorilla gorilla ENSGGOG00000026704 ortholog_one2many 1 retrogene
retro_ggor_2780,
Myotis lucifugus ENSMLUG00000010603 ortholog_one2one 1 retrogene
retro_mluc_1623,
Macaca mulatta ENSMMUG00000020214 ortholog_one2many 1 retrogene
retro_mmul_216,
Nomascus leucogenys ENSNLEG00000004454 ortholog_one2one 1 retrogene
retro_nleu_1054,
Oryctolagus cuniculus ENSOCUG00000017097 ortholog_one2many 1 retrogene
retro_ocun_617,
Sus scrofa ENSSSCG00000016970 ortholog_one2many 1 retrogene
retro_sscr_654,
Ictidomys tridecemlineatus ENSSTOG00000012288 ortholog_one2one 1 retrogene
retro_itri_968,
Tupaia belangeri ENSTBEG00000002399 ortholog_one2one 1 retrogene
retro_tbel_1033,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2813 74.43 58.92
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Download FASTA sequences of all ENSPTRG00000016955 retrocopies