Parental gene:

ENSSSCG00000011676

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:13:90496248..90523075(+)


>ENSSSCG00000011676
GGTTTGATCTTGCTCTTCTACCTAGTCTTTTATGTGTTCCTGGCTGCACTCTTTGCATTCACAATGTGGGTTATGCTTCA
GACCCTGAACGATGAGGTTCCAAAATATCGTGACCAGATTTCTAGTCCAGGACTTATGGTTTTTCCAAAACCAGTGTCAG
CGTTGGATTATTCATTCAGTGTGTCTGATCCAGACTCCTATAAAGGGTACATTGATGACCTTAAGAAATTTCTAAAGCCA
TATGACTTAGAAGAACAGAAGAATCTCACAGATTGTACCGATGGAAAATTTCTTGAACAGAAGGGTCCACATTATGATGC
ATGTCGGTTTCCTCTTAACTTACTTGAAGCATGCAGTGGTGAGATTGATCCCCAGTTTGGCTACTCCAGAGGAAACCCTT
GTATTCTTGTGAAAATGAACAGAATAATTGGATTAAAGCCTCAAGGAGAACCAAGGATAGAATGTATTTCGAAGGGTGAA
AGCACAGCAGTTCTATCAACTTATCCTCCCAATGGAAAGATAGACATAAAGTATTTTCCATATTATGGAAAAAAACTGCA
TGGGAACTATCTACAGCCATTAGTTGCTGTCCAGCTCACCTTTGATGCTGGCAATGACATGAACGAAGTAACAGTTGAGT
GCAAGATTGATGGATCACCCAACCTAAAAAACCAGGATGACCGTGACAAGTTTTTAGGACGAGTTGCATTCAAAGTCACC
GTGCATGCATAG

Library Parental gene expression (RPM)
SRP014902_placenta 4 .65 RPM
SRP014902_testis 31 .12 RPM
SRP018856_adipose 16 .85 RPM
SRP018288_kidney 26 .30 RPM
SRP018288_lung 29 .22 RPM
SRP018288_liver 5 .44 RPM
SRP018288_heart 13 .78 RPM
SRP035408_liver 5 .61 RPM
SRP035408_brain 29 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014140 ortholog_one2many 5 retrogenes
retro_btau_1136, retro_btau_1322, retro_btau_1743, retro_btau_318, retro_btau_920,
Choloepus hoffmanni ENSCHOG00000007515 ortholog_one2many 4 retrogenes
retro_chof_1000, retro_chof_1421, retro_chof_2393, retro_chof_2445,
Callithrix jacchus ENSCJAG00000001981 ortholog_many2many 1 retrogene
retro_cjac_309,
Cavia porcellus ENSCPOG00000003739 ortholog_many2many 4 retrogenes
retro_cpor_1181, retro_cpor_1468, retro_cpor_1506, retro_cpor_222,
Equus caballus ENSECAG00000019885 ortholog_one2many 2 retrogenes
retro_ecab_1084, retro_ecab_468,
Homo sapiens ENSG00000069849 ortholog_one2many 2 retrogenes
retro_hsap_1387, retro_hsap_2263,
Loxodonta africana ENSLAFG00000010553 ortholog_one2many 1 retrogene
retro_lafr_815,
Mus musculus ENSMUSG00000032412 ortholog_one2many 2 retrogenes
retro_mmus_2174, retro_mmus_3427,
Nomascus leucogenys ENSNLEG00000004663 ortholog_one2many 1 retrogene
retro_nleu_1286,
Otolemur garnettii ENSOGAG00000008662 ortholog_one2many 1 retrogene
retro_ogar_2284,
Procavia capensis ENSPCAG00000013927 ortholog_one2many 1 retrogene
retro_pcap_350,
Pongo abelii ENSPPYG00000014169 ortholog_one2many 1 retrogene
retro_pabe_1953,
Pan troglodytes ENSPTRG00000015476 ortholog_one2many 2 retrogenes
retro_ptro_1603, retro_ptro_951,
Rattus norvegicus ENSRNOG00000011501 ortholog_one2many 2 retrogenes
retro_rnor_2571, retro_rnor_789,
Ictidomys tridecemlineatus ENSSTOG00000013235 ortholog_one2many 1 retrogene
retro_itri_1663,
Tupaia belangeri ENSTBEG00000001004 ortholog_many2many 1 retrogene
retro_tbel_3620,
Tarsius syrichta ENSTSYG00000000222 ortholog_one2many 1 retrogene
retro_tsyr_330,
Tursiops truncatus ENSTTRG00000012038 ortholog_one2many 1 retrogene
retro_ttru_333,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_95 94.40 95.47
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2. retro_sscr_889 78.57 51.44
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3. retro_sscr_945 52.22 72.84
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Download FASTA sequences of all ENSSSCG00000011676 retrocopies