RetrogeneDB ID:

retro_chof_2393

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_70995:5398..6122(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP1B3
Ensembl ID:ENSCHOG00000007515
Aliases:None
Description:ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806]


Retrocopy-Parental alignment summary:






>retro_chof_2393
TTGATCTTGCTCTTCTACCCAGTCTTCTATGAGCTCCTGGCTGCACTCTGCACGTTCACAGTGTGGGTCATGCTTCAGAC
TTTGAACGGCGAGCTTCCAAAATATCGTGACCAGATTCCTAGTTCAGGACTTACGGTTTTTCCAGAACCATTTACTGCAT
TGGAATATACAATCAGTTTGTCTGATTCAGGCTCCTATAAAGCATACATTGAAGACCTTACTAGTTTTCTAAAGCCATAT
GATTTAGAAGAACGGAGGAATCTCACAGTCTGTCCTGATGGAGTACTTTTTGAACAGAAGGGCCCAGATTATCAGGCATG
TCAGTTTCCTGTTCACTTACTTGAAGAATGCAGTGGTAGGAGAGATCCTGATTTTGGCTATTCCAGAGGAAAACCTTGTG
TTCTTGTGAAAATGAACAGAGTAATTGCATTAAAGCTTGAAGGAAAACCAAGGATAATGTGTGTTCCCAAGAATGGAAAC
ACTACAGTTTTATCAATTTATCCTTGCAATGGAATTGTAGACTTAAAATATTTTCCATATTATGGAAAAAATTGCATGTG
GGATATTTACAGCCAGTAGTTGCTGTCCAGCCAGTCTTTATCTTTAACAGCACCAAGAAAAAGTGACAGCTGAGTGCAAG
ATTGCTGGGGCACCCAACCTAAAAAGCCAGGATGATCGCAACAAGTTTTTGGGATGAGTTGTGTTCAAAATCACAGTGAA
TGCA

ORF - retro_chof_2393 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.2 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLILLFYLVFYGFLAALFTFTMWVMLQTLNDEVPKYRDQIPSPGLMVFPKPFTALEYTISLSDSGSYKAYV
LILLFY.VFY..LAAL.TFT.WVMLQTLN.E.PKYRDQIPS.GL.VFP.PFTALEYTISLSDSGSYKAY.
RetrocopyLILLFYPVFYELLAALCTFTVWVMLQTLNGELPKYRDQIPSSGLTVFPEPFTALEYTISLSDSGSYKAYI
ParentalEDLTNFLKP-NVVEQKNLTVCPDGALFEQKGPDYHACQFPVHLLEECSGMRDPDFGYSKGKPCVLVKMNR
EDLT.FLKP....E..NLTVCPDG.LFEQKGPDY.ACQFPVHLLEECSG.RDPDFGYS.GKPCVLVKMNR
RetrocopyEDLTSFLKPYDLEERRNLTVCPDGVLFEQKGPDYQACQFPVHLLEECSGRRDPDFGYSRGKPCVLVKMNR
ParentalIIGLKPEGEPRIMCVPKDGNTAVLSTYPHNGIVDLKYFPYYG-KKLHVGYLQPVVAVQPVFSSNSTKK-E
.I.LK.EG.PRIMCVPK.GNT.VLS.YP.NGIVDLKYFPYYG.KKLHVGYLQPVVAVQPVF..NSTKK..
RetrocopyVIALKLEGKPRIMCVPKNGNTTVLSIYPCNGIVDLKYFPYYG<KKLHVGYLQPVVAVQPVFIFNSTKK<K
ParentalTTVECKIDGSPNLKSQDDRDKFLGRVVFKITVNA
.T.ECKI.G.PNLKSQDDR.KFLG.VVFKITVNA
RetrocopyVTAECKIAGAPNLKSQDDRNKFLG*VVFKITVNA