Parental gene:

DCAF12, ENSSSCG00000010986

Aliases:None
Description:DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Organism:Pig (Sus scrofa)
Coordinates:10:36863116..36900643(+)


>ENSSSCG00000010986
AATACAGTAGGATCTCTCCATCTGACAAAGAAAAGGAAAAGACTCCCCCCAGTGAAGAGATCCTTAGTGTACTACCTGAA
GAACCGAGAAGTCAGGCTACAGAATGAAACCAACTACTCTCGAGTGTTGCATGGTTATGCAGCACAGCAACTTCCCAGTC
TCCTGAAGGAAAGAGAGTTTCACCTTGGGACCCTCAATAAAGTGTTTGCATCTCAGTGGCTAAATCATAGGCAAGTGGTG
TGTGGCACAAAATGCAACACGCTGTTTGTAGTGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTTTGAAGGACCG
AGAGCCTGGAGGTGTGACACAGCAGGGCTGTGGTATCCATGCTATTGAGCTGAATCCCTCTAGAACACTGTTAGCCACTG
GAGGAGACAACCCCAACAGTCTTGCCATCTACCGGCTGCCTACACTAGATCCTGTGTGTGTGGGAGATTTTTGTGATGGA
CACAAGGACTGGATTTTTTCCATTGCATGGATCAGTGACACTATGGCAGTGTCTGGCTCCCGTGATGGTTCTATGGGACT
CTGGGAGGTGACAGACGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCACGGGTCCCTGTATATGCTCACATCA
CTCACAAGGCTTTAAAGGACATCCCCAAGGAGGACACAAATCCTGATAACTGCAAGGTCCGGGCTCTGGCCTTCAACAAC
AAGAACAAGGAATTGGGAGCAGTGTCTCTGGATGGCTACTTTCATCTCTGGAAGGCTGAAAATACACTGTCTACCGGTTT
TCTCCTCTCCACCAAACTGCCATATTGCCGTGAGAATGTGTGCCTGGCTTATGGTAGTGAATGGTCAGTGTACGCAGTGG
GCTCCCAAGCTCATGTCTCCTTCTTGGATCCACGGCAGCCATCGTACAACGTCAAGTCCGTCTGCTCCAGGGAGCGAGGC
AGTGGGATCCGGTCAGTGAGCTTCTATGAGCACATCATCACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACAT
CCGAGCTCAGAGATTCCTGGAAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCCAGGCTAGCAGGGGAGAATCTGAAAC
TAACCACTGGCAAAGGCTGGCTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGACATTGATTTCTTCCCTAATGCT
GTTTACACCCACTGCTACGACTCGTCCGGGACGAAACTCTTTGTGGCAGGAGGTCCCCTCCCTTCAGGGCTCCATGGAAA
CTATGCTGGGCTCTGGAGTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 5 .31 RPM
SRP014902_testis 21 .50 RPM
SRP018856_adipose 29 .47 RPM
SRP018288_kidney 15 .27 RPM
SRP018288_lung 17 .51 RPM
SRP018288_liver 5 .76 RPM
SRP018288_heart 8 .51 RPM
SRP035408_liver 2 .64 RPM
SRP035408_brain 2 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000309 ortholog_one2one 1 retrogene
retro_amel_73,
Bos taurus ENSBTAG00000021573 ortholog_one2one 3 retrogenes
retro_btau_1794, retro_btau_1795, retro_btau_1796,
Equus caballus ENSECAG00000023064 ortholog_one2one 2 retrogenes
retro_ecab_1128, retro_ecab_1129,
Erinaceus europaeus ENSEEUG00000013279 ortholog_one2one 1 retrogene
retro_eeur_403,
Microcebus murinus ENSMICG00000005881 ortholog_one2one 1 retrogene
retro_mmur_14,
Macaca mulatta ENSMMUG00000017458 ortholog_one2one 1 retrogene
retro_mmul_202,
Nomascus leucogenys ENSNLEG00000004996 ortholog_one2one 1 retrogene
retro_nleu_6,
Otolemur garnettii ENSOGAG00000015799 ortholog_one2one 1 retrogene
retro_ogar_237,
Ochotona princeps ENSOPRG00000001281 ortholog_one2one 2 retrogenes
retro_opri_1178, retro_opri_470,
Pongo abelii ENSPPYG00000019127 ortholog_one2one 1 retrogene
retro_pabe_64,
Pteropus vampyrus ENSPVAG00000008654 ortholog_one2one 1 retrogene
retro_pvam_16,
Ictidomys tridecemlineatus ENSSTOG00000006904 ortholog_one2one 1 retrogene
retro_itri_168,
Tarsius syrichta ENSTSYG00000014394 ortholog_one2one 1 retrogene
retro_tsyr_1965,
Tursiops truncatus ENSTTRG00000010591 ortholog_one2one 1 retrogene
retro_ttru_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_17 66.98 98.38
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Download FASTA sequences of all ENSSSCG00000010986 retrocopies