Parental gene: | DCAF12, ENSBTAG00000021573 |
| Aliases: | DCAF12, WDR40A |
| Description: | DDB1- and CUL4-associated factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q3MHH0] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 8:76828791..76868169(-) |
>ENSBTAG00000021573
ATGGCCAGGAAAGCAGTTAGCAGGAAGCGGAAAGCACCCGCCTTGCCGGGAGCTGGGAGCGACGCTCAGGACCCACAGTT
TGGCTGGGATCACTCACTTCACAAAAGGAAGCGACTCCCCCCAGTGAAGAGATCCTTAGTGTACTACCTGAAGAACCGAG
AAGTCAGGCTACAGAATGAAACCAGCTACTCCCGAGTGTTGCATGGGTATGCAGCACAGCAACTTCCCAGTCTCCTGAAG
GAGAGAGAGTTTCACCTTGGGACCCTTAATAAAGTGTTTGCATCTCAGTGGCTGAACCATAGGCAAGTGGTGTGTGGCAC
AAAATGCAACACGCTATTTGTAGTGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTCTGAAGGACCGGGAGCCTG
GATGTGTGACTCAGCAGGGCTGCGGTATCCATGCTATCGAGCTGAATCCCTCTAGAACACTGTTAGCCACTGGAGGAGAC
AACCCTAATAGTCTTGCCATCTATAGGCTGCCTACACTAGATCCTGTGTGTGTGGGAGATGATGGACACAAGGACTGGAT
CTTTTCCATCGCGTGGATCAGTGACACTATGGCCGTGTCTGGCTCACGTGATGGTTCTATGGGACTCTGGGAGGTGACAG
ATGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCGCGAGTCCCTGTGTATTCTCACATCACTCACAAGGCCTTA
AAGGACATCCCCAAGGAGGACACAAACCCTGACAACTGCAAGGTCCGGGCTCTGGCCTTCAACAACAAGAACAAGGAATT
GGGAGCAGTATCGCTGGATGGCTACTTTCATCTCTGGAAGACTGAAAATACCCTATCTAAGCTCCTCTCCACCAAACTGC
CATATTGCCGTGAAAATGTGTGCCTGGCCTATGGTAATGAATGGTCAGTCTATGCAGTGGGCTCCCAAGCTCACGTCTCT
TTCTTGGATCCGCGGCAGCCATCATACAACGTCAAGTCTGTCTGCTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAG
CTTCTATGAGCACATCATCACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAAAGGTTCCTGG
AAGAGAAGCTCTCAGCTTGTTACGGGTCCAAGCCCAAACTCGCAGGAGAGAACCTGAAACTAACAACTGGCAAAGGCTGG
CTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGACATTGATTTCTTCCCCAATGCTGTTTACACCCACTGCTACGA
CTCGTCCGGAACGAAACTCTTCGTGGCAGGAGGTCCCCTCCCTTCAGGGCTCCACGGAAACTATGCTGGGCTCTGGAGTT
AA
ATGGCCAGGAAAGCAGTTAGCAGGAAGCGGAAAGCACCCGCCTTGCCGGGAGCTGGGAGCGACGCTCAGGACCCACAGTT
TGGCTGGGATCACTCACTTCACAAAAGGAAGCGACTCCCCCCAGTGAAGAGATCCTTAGTGTACTACCTGAAGAACCGAG
AAGTCAGGCTACAGAATGAAACCAGCTACTCCCGAGTGTTGCATGGGTATGCAGCACAGCAACTTCCCAGTCTCCTGAAG
GAGAGAGAGTTTCACCTTGGGACCCTTAATAAAGTGTTTGCATCTCAGTGGCTGAACCATAGGCAAGTGGTGTGTGGCAC
AAAATGCAACACGCTATTTGTAGTGGATGTCCAGACAAGCCAGATCACCAAGATTCCCATTCTGAAGGACCGGGAGCCTG
GATGTGTGACTCAGCAGGGCTGCGGTATCCATGCTATCGAGCTGAATCCCTCTAGAACACTGTTAGCCACTGGAGGAGAC
AACCCTAATAGTCTTGCCATCTATAGGCTGCCTACACTAGATCCTGTGTGTGTGGGAGATGATGGACACAAGGACTGGAT
CTTTTCCATCGCGTGGATCAGTGACACTATGGCCGTGTCTGGCTCACGTGATGGTTCTATGGGACTCTGGGAGGTGACAG
ATGATGTGTTGACCAAAAGTGATGCAAGGCACAATGTGTCGCGAGTCCCTGTGTATTCTCACATCACTCACAAGGCCTTA
AAGGACATCCCCAAGGAGGACACAAACCCTGACAACTGCAAGGTCCGGGCTCTGGCCTTCAACAACAAGAACAAGGAATT
GGGAGCAGTATCGCTGGATGGCTACTTTCATCTCTGGAAGACTGAAAATACCCTATCTAAGCTCCTCTCCACCAAACTGC
CATATTGCCGTGAAAATGTGTGCCTGGCCTATGGTAATGAATGGTCAGTCTATGCAGTGGGCTCCCAAGCTCACGTCTCT
TTCTTGGATCCGCGGCAGCCATCATACAACGTCAAGTCTGTCTGCTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAG
CTTCTATGAGCACATCATCACTGTGGGCACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAAAGGTTCCTGG
AAGAGAAGCTCTCAGCTTGTTACGGGTCCAAGCCCAAACTCGCAGGAGAGAACCTGAAACTAACAACTGGCAAAGGCTGG
CTGAATCATGATGAAACCTGGAGGAATTACTTTTCGGACATTGATTTCTTCCCCAATGCTGTTTACACCCACTGCTACGA
CTCGTCCGGAACGAAACTCTTCGTGGCAGGAGGTCCCCTCCCTTCAGGGCTCCACGGAAACTATGCTGGGCTCTGGAGTT
AA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 40 .29 RPM |
| SRP017611_kidney | 69 .64 RPM |
| SRP017611_liver | 41 .08 RPM |
| ERP005899_muscle | 58 .97 RPM |
| ERP005899_liver | 39 .94 RPM |
| SRP030211_testis | 172 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000000309 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000023064 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000013279 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000005881 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017458 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004996 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015799 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000001281 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000019127 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000008654 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000010986 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006904 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000014394 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010591 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1794 | 66.12 | 92.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1795 | 62.94 | 86.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_1796 | 59.31 | 50.99 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000021573 retrocopies