Parental gene:

DCAF12, ENSOPRG00000001281

Aliases:None
Description:DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_5067:12864..75660(-)


>ENSOPRG00000001281
ATGGCCCGGAAAGCAGTTAGCAGGAAGCGGAAAGCGCCTGCCTCACCCGGAGCTGGGAGCGACGCGCAGGGTCCGCAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTATTTGTCGTGGATGTCCAGACAAGCCAGATCACCAAGATACCCATTCTGAAAGACCGGGAGCCTG
GAGTCATGACCCAGCAGGGCTGTGGTATCCATGCCATCGAGCTGAATCCCTCTAGAACATTGTTAGCCACTGGAGGAGAC
AACCCCAACAGTCTTGCCATCTATCGCCTGCCTACACTGGATCCTGTGTGTGTGGGGGATGATGGACACAAGGATTGGAT
CTTTTCCATCGCATGGATCAGTGATACTATGGCGGTGTCTGGCTCACGCGATGGTTCTATGGGACTCTGGGAGGTGACAG
ATGAAGTGTTGACCAAAAGTGATGCAAGGCACAATATGTCACAGGTCCCTGTGTATTCCCATATCACTCACAAGGCCTTA
AAGGACATCCCCAAGGAAGACACAAACCCTGACAACTGCAAGGTCCGGGCTCTGGCCTTCAACGATAAGAACAAGGAACT
GGGAGCAGTGTCTCTGTGCTACTTTCATCTCTGGGCTGAAAATACGCTTTCTAGGCTCCTCTCCACCAAACTGCCATATT
GCCGAGAGAATGTATGTCTAGCCTATGGCAGTGAATGGACAGTGTATGCAGAGGGCTCCCAAGCCCATGTCTCCTTCTTG
GATCCACGTCAGCCATCATACAATGTCAAGTCTGTGTGTTCCAGGGAGCGAGGCAGTGGGATCCGGTCAGTGAGTTTCTA
TGAGCACATCATCACCGTGGGCACAGGGCAGGGCTCCCTGTTATTCTATGACATCCGAGCCCAGAGATTCCTGGAAGAGA
GGCTCTCGGCTTGTTATGGCTCCAAGCCCAGACTGGCAGGGGAGAATCTGAAACTAACTACTGGCAGAGGCTGGCTGAAT
CACGATGAGACCTGGAGGAATTACTTTTCGGACATTGACTTCTTCCCCAACGCCGTGTACACCCACTGCTACGACTCGTC
CGGCACGAAACTTTTTGTGGCAGGGGGGCCCCTCCCCTCAGGGCTCCATGGAAACTATGCTGGGCTCTGGAGTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000309 ortholog_one2one 1 retrogene
retro_amel_73,
Bos taurus ENSBTAG00000021573 ortholog_one2one 3 retrogenes
retro_btau_1794, retro_btau_1795, retro_btau_1796,
Equus caballus ENSECAG00000023064 ortholog_one2one 2 retrogenes
retro_ecab_1128, retro_ecab_1129,
Erinaceus europaeus ENSEEUG00000013279 ortholog_one2one 1 retrogene
retro_eeur_403,
Microcebus murinus ENSMICG00000005881 ortholog_one2one 1 retrogene
retro_mmur_14,
Macaca mulatta ENSMMUG00000017458 ortholog_one2one 1 retrogene
retro_mmul_202,
Nomascus leucogenys ENSNLEG00000004996 ortholog_one2one 1 retrogene
retro_nleu_6,
Otolemur garnettii ENSOGAG00000015799 ortholog_one2one 1 retrogene
retro_ogar_237,
Pongo abelii ENSPPYG00000019127 ortholog_one2one 1 retrogene
retro_pabe_64,
Pteropus vampyrus ENSPVAG00000008654 ortholog_one2one 1 retrogene
retro_pvam_16,
Sus scrofa ENSSSCG00000010986 ortholog_one2one 1 retrogene
retro_sscr_17,
Ictidomys tridecemlineatus ENSSTOG00000006904 ortholog_one2one 1 retrogene
retro_itri_168,
Tarsius syrichta ENSTSYG00000014394 ortholog_one2one 1 retrogene
retro_tsyr_1965,
Tursiops truncatus ENSTTRG00000010591 ortholog_one2one 1 retrogene
retro_ttru_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_470 55.23 75.39
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2. retro_opri_1178 52.35 60.31
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Download FASTA sequences of all ENSOPRG00000001281 retrocopies