Parental gene:

SLC30A9, ENSSSCG00000008801

Aliases:None
Description:Sus scrofa solute carrier family 30 (zinc transporter), member 9 (SLC30A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001137632]
Organism:Pig (Sus scrofa)
Coordinates:8:34713129..34766670(+)


>ENSSSCG00000008801
ATGTTACCGGGCTTGGCCGCCGCCGCTGCGGCCCACAGATGCAGCTGGTCCTCCCTGTGCCGGCTCCGTCTGCGCTGCAG
GGCGGCGGCCCGCGGCTCCAGCGACCGCCAGGAATGGCAGAATTTAGTGTCGTTTGGAAGCTTTTCAAACATTGTTCCCT
GTTGCACGCTGAATCAAGTAAAGTTGTACTCCACAAATGTTCAGAAAGAAGGACAGGGATCACAAACTCTCAAAATGGAA
AAAGTACCATCATTTGATGAAACTGCAGAAAATATTGGTGCAGAACTGAAAGCTCCACTCCTTAAGCAAGAACCTCTCCA
AGTAAGAGTCAAAGCAGTCCTTAAAAAGAGGGAATATGGACCAAAATACACTCAGAATAATTTCATCACTGGAGTCAGAG
CAATGAATGAGTTCTGCCTCAAATCCAGCGATCTAGAACAGCTTCGAAAAATCAGACGACGAAGTCCTCATGAAGATACT
GAGTCCTTTACTGTATACTTGAGATCAGATGTGGAGGCAAAATCTTTGGAAGTTTGGGGAAGCCCTGAAGCTCTTGCCAG
AGAGAAAAAACTTCGTAAAGAAGCAGAAATAGAATATAGAGAAAGGTTATTTCGAAACCAAAAAATATTGAGAGAATACA
GAGACTTTCTGGGAAATACTAAGCCACGCTCTCGAGCGACATCAATTTTTTTTAAGGGGCCAGGAAAAGTGGTGATTGTT
GCCATTTGCATCAATGGATTAAACTGCTTCTTCAAATTTCTTGCCTGGATTTATACAGGTTCAGCAAGTATGTTCTCAGA
AGCTATACATTCTTTATCTGATACTTGTAATCAGGGCTTACTAGCATTGGGCATCAGTAAGTCTGTTCAAACACCAGATC
CTACTCATCCGTATGGATTTTCGAATATGCGCTATATTGCTTCACTAATTAGTGGTGTTGGTATTTTCATGATGGGTGCA
GGATTGTCTTGGTACCATGGAATCATGGGATTGCTTAATCCTCAACCAATAGAATCTCTTCTATGGGCATATTGTATTTT
AGCGGGATCATTGGTATCTGAAGGAGCAACACTTCTTGTTGCTATAAATGAGCTTCGTAGGAGTGCTCGGGCCAAAGGAA
TGTCATTTTACAAGTATGTAATGGAAAGTCGTGATCCTAGTACGAATGTTATCTTATTGGAGGATACTGCAGCAGTGTTG
GGAGTGATAATAGCAGCCACTTGTATGGGCCTTACTTCTGTGACAGGCAACCCACTGTATGACAGCCTAGGTTCTTTGGG
TGTGGGCACCTTATTAGGCGTGGTCTCAGCATTCCTCATCTACACTAACACAGAAGCCCTCTTAGGGCGATCCATCCAGC
CAGACCAAGTACAGCGGCTTACTGAACTTCTGGAGAACGACCCGTCAGTAAGGGCAATTCATGATGTTAAAGCCACAGAT
CTGGGATTAGGGAAAGTAAGATTTAAGGCAGAAGTAGATTTTGACGGACGAGTTGTTACAAGATCATATTTGGAAAAACA
AGATTTTGACCAAATGCTACAAGAAATTCAAGAAGTGAAAACTCCTGAAGAACTAGAGACCTTTATGCTTAAACATGGAG
AAAATATTATTGATACTTTAGGAGCTGAAGTAGACAGACTTGAGAAGGAACTGAAAAAACGAAATCCTGAAGTTCGACAT
GTAGATTTGGAAATACTATAG

Library Parental gene expression (RPM)
SRP014902_placenta 12 .87 RPM
SRP014902_testis 22 .35 RPM
SRP018856_adipose 40 .24 RPM
SRP018288_kidney 74 .37 RPM
SRP018288_lung 45 .92 RPM
SRP018288_liver 15 .51 RPM
SRP018288_heart 40 .36 RPM
SRP035408_liver 15 .62 RPM
SRP035408_brain 41 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019226 ortholog_one2one 1 retrogene
retro_cjac_408,
Cavia porcellus ENSCPOG00000000374 ortholog_one2one 1 retrogene
retro_cpor_805,
Otolemur garnettii ENSOGAG00000000501 ortholog_one2one 1 retrogene
retro_ogar_3376,
Rattus norvegicus ENSRNOG00000002246 ortholog_one2one 1 retrogene
retro_rnor_2805,
Ictidomys tridecemlineatus ENSSTOG00000024271 ortholog_one2many 1 retrogene
retro_itri_658,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_326 94.24 94.88
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Download FASTA sequences of all ENSSSCG00000008801 retrocopies