Parental gene:

SLC30A9, ENSCJAG00000019226

Aliases:None
Description:solute carrier family 30 (zinc transporter), member 9 [Source:HGNC Symbol;Acc:1329]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:148704466..148805882(-)


>ENSCJAG00000019226
ATGTTACCGGGCTTGGCCGCCGCCGCCGCGGCCCACAGATGTGGGTGGTCCTCTCTGTGCCGGCTCCGTCTGCGATGCAG
GGCGGTGACCCGTGGCCCCAGCAACCGCCAGGAGTGGCAGAATTTAGTGACATTTGGAAGCTTTTCAAACTTGGTTCCCT
ATAGTCATCCATACATTTGTACATTGAGTCAAGTCAAGTTGTACTCCACAGATGTTCAGAAAGAAGGACAGGGATCACAA
ACTCTCAGAGTGGAAAAAGTACCATCGTTTGAAACAGCAGAAGATATGGGTGCACAACTCAAAGCTCCACTTAAGCCAGA
CCCTCTCCAAGTAAGAGTTAAAGCAGTCCTTAAGAAAAGGGAGTATGGATCAAAGTACACTCAGAATAATTTCATCACTG
GAGTCAGAGCAATAAATGAGTTCTGCCTTAAATCCAGCGATCTAGAACAACTTCGAAAAATCAGACGACGAAGTCCCCAT
GAAGATACTGAGTCTTTTACTGTATACTTGAGATCAGATGTGGAGGCAAAATCTTTGGAAGTTTGGGGAAGCCTGGAAGC
TCTTGCCAGAGAGAAAAAATTGCGCAAGGAAGCAGAAATAGAATACAGAGAAAGGCTATTTAGAAACCAAAAAATATTAA
GAGAATACAGAGATTTCTTGGGAAATACCAAGCCGCGCTCCAGAACGGCATCAGTGTTTTTTAAGGGACCAGGAAAAGTG
GTGATGGTTGCAATTTGCATCAATGGATTAAACTGCTTCTTTAAATTTCTTGCCTGGATTTATACCGGTTCAGCAAGTAT
GTTCTCAGAAGCTATACATTCATTATCTGATACTTGTAATCAGGGTTTACTAGCACTGGGCATCAGTAAGTCTGTTCAAA
CACCAGATCCTTCTCATCCGTATGGATTTTCGAATATGCGCTATATTTCTTCACTAATTAGTGGTGTTGGTATTTTCATG
ATGGGTGCAGGACTATCTTGGTACCATGGAGTCATGGGATTGCTTCATCCTCAACCAATAGAATCCCTTCTATGGGCCTA
TTGTATTTTAGCAGGATCATTATTATCTGAAGGAGCAACACTTCTTGTTGCTGTAAATGAACTTCGTAGGAGTGCTCGGA
CCAAAGGAATGTCGTTTTACAAATATGTAATGGAAAGTCGTGATCCTAGTACAAATGTTATATTATTGGAGGATACTGCT
GCAGTCTTGGGAGTTATAATAGCAGCCACTTGCATGGGCCTTACTTCTATAACAGGCAATCCACTGTATGACAGCCTGGG
TTCTTTGGGTGTGGGCACCTTATTAGGCGTGGTCTCAGCATTCCTCATCTACACTAATACAGAAGCACTCTTAGGGCGGT
CCATCCAGCCAGAACAAGTACAGCGGCTCACTGAACTCCTGGAGAATGACCCATCAGTAAGGGCAATTCATGATGTTAAA
GCCACAGATCTGGGATTAGGTAAAGTAAGATTTAAGGCAGAAGTAGATTTTGATGGGCGAGTTGTTACAAGATCATATTT
GGAAAAACAAGATTTTGACCAAATGTTACAAGAAATTCAAGAAGTGAAAACTCCTGAAGAACTAGAGATCTTTATGCTTA
AACATGGAGAAAATATTATTGATACTTTAGGAGCTGAAGTAGATAGACTTGAGAAGGAACTGAAAAAACGAAATCCTGAA
GTTCGACATGTAGATTTGGAGATACTATGA

Library Parental gene expression (RPM)
SRP051959_spleen 29 .10 RPM
SRP051959_skeletal_muscle 23 .28 RPM
SRP051959_lymph_node 26 .64 RPM
SRP051959_lung 30 .14 RPM
SRP051959_liver 21 .14 RPM
SRP051959_kidney 48 .28 RPM
SRP051959_heart 28 .06 RPM
SRP051959_colon 36 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000374 ortholog_one2one 1 retrogene
retro_cpor_805,
Otolemur garnettii ENSOGAG00000000501 ortholog_one2one 1 retrogene
retro_ogar_3376,
Rattus norvegicus ENSRNOG00000002246 ortholog_one2one 1 retrogene
retro_rnor_2805,
Sus scrofa ENSSSCG00000008801 ortholog_one2one 1 retrogene
retro_sscr_326,
Ictidomys tridecemlineatus ENSSTOG00000024271 ortholog_one2many 1 retrogene
retro_itri_658,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_408 96.92 59.74
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Download FASTA sequences of all ENSCJAG00000019226 retrocopies