Parental gene:

ENSSSCG00000006839

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:4:121475246..121485101(+)


>ENSSSCG00000006839
ATGGCAGATGAGGAGGAAGACCCCACCTTTGAGGAAGAAAGTGAAGAAATTGGAGGAGGTGCCGAAGGTGGACAGGGTAA
AAGAAAGAGACTTTTTTCTAAAGAATTACGGTGTATGATGTATGGGTTTGGGGATGACCAGAATCCTTATACCGAGTCGG
TGGATATTCTTGAAGATCTTGTCATAGAGTTCATCACTGAGATGACTCACAAGGCAATGTCAATTGGAAGACAAGGTCGG
GTACAAGTTGAAGATATCGTCTTTTTGATTCGAAAGGACCCAAGAAAGTTTGCTAGGGTTAAAGACTTGCTTACTATGAA
TGAAGAATTAAAACGAGCTAGAAAAGCATTTGATGAAGCAAACTATGGATCTTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .13 RPM
SRP014902_testis 1 .13 RPM
SRP018856_adipose 3 .01 RPM
SRP018288_kidney 8 .57 RPM
SRP018288_lung 1 .63 RPM
SRP018288_liver 3 .36 RPM
SRP018288_heart 5 .87 RPM
SRP035408_liver 0 .50 RPM
SRP035408_brain 2 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004542 ortholog_one2many 1 retrogene
retro_amel_1015,
Canis familiaris ENSCAFG00000019855 ortholog_one2many 1 retrogene
retro_cfam_1084,
Choloepus hoffmanni ENSCHOG00000003347 ortholog_one2many 2 retrogenes
retro_chof_1739, retro_chof_296,
Callithrix jacchus ENSCJAG00000002701 ortholog_one2many 3 retrogenes
retro_cjac_1241, retro_cjac_1268, retro_cjac_969,
Cavia porcellus ENSCPOG00000001081 ortholog_one2many 1 retrogene
retro_cpor_1042,
Dasypus novemcinctus ENSDNOG00000018227 ortholog_many2many 16 retrogenes
retro_dnov_1126, retro_dnov_1140, retro_dnov_1237, retro_dnov_1308, retro_dnov_1539, retro_dnov_1899, retro_dnov_214, retro_dnov_222, retro_dnov_234, retro_dnov_314, retro_dnov_577, retro_dnov_599, retro_dnov_630, retro_dnov_703, retro_dnov_893, retro_dnov_925,
Loxodonta africana ENSLAFG00000011432 ortholog_one2many 2 retrogenes
retro_lafr_781, retro_lafr_799,
Microcebus murinus ENSMICG00000008725 ortholog_one2many 5 retrogenes
retro_mmur_1061, retro_mmur_128, retro_mmur_1376, retro_mmur_53, retro_mmur_576,
Mus musculus ENSMUSG00000048100 ortholog_one2many 2 retrogenes
retro_mmus_1272, retro_mmus_710,
Nomascus leucogenys ENSNLEG00000002350 ortholog_many2many 1 retrogene
retro_nleu_27,
Otolemur garnettii ENSOGAG00000013494 ortholog_many2many 6 retrogenes
retro_ogar_192, retro_ogar_2232, retro_ogar_23, retro_ogar_2399, retro_ogar_2659, retro_ogar_2931,
Procavia capensis ENSPCAG00000005773 ortholog_many2many 1 retrogene
retro_pcap_80,
Sorex araneus ENSSARG00000008033 ortholog_one2many 1 retrogene
retro_sara_531,
Ictidomys tridecemlineatus ENSSTOG00000011144 ortholog_many2many 8 retrogenes
retro_itri_1094, retro_itri_1650, retro_itri_1717, retro_itri_1728, retro_itri_214, retro_itri_70, retro_itri_812, retro_itri_969,
Tursiops truncatus ENSTTRG00000003167 ortholog_one2many 1 retrogene
retro_ttru_730,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_87 100.00 100.00
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Download FASTA sequences of all ENSSSCG00000006839 retrocopies